Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
VPS4BO75351 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 RN7SL471P-201ENST00000580476 299 ntBASIC18.88■□□□□ 0.61
VPS4BO75351 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VPS4BO75351 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 AL138781.2-201ENST00000617896 1843 ntBASIC18.88■□□□□ 0.61
VPS4BO75351 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.88■□□□□ 0.61
VPS4BO75351 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VPS4BO75351 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4BO75351 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.87■□□□□ 0.61
VPS4BO75351 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VPS4BO75351 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
VPS4BO75351 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.87■□□□□ 0.61
VPS4BO75351 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VPS4BO75351 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
VPS4BO75351 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
VPS4BO75351 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.87■□□□□ 0.61
VPS4BO75351 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4BO75351 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.87■□□□□ 0.61
VPS4BO75351 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VPS4BO75351 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VPS4BO75351 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VPS4BO75351 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS4BO75351 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VPS4BO75351 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VPS4BO75351 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS4BO75351 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.86■□□□□ 0.61
VPS4BO75351 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS4BO75351 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS4BO75351 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
VPS4BO75351 KRT17P1-201ENST00000399211 1546 ntBASIC18.85■□□□□ 0.61
VPS4BO75351 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4BO75351 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
VPS4BO75351 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4BO75351 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4BO75351 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS4BO75351 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS4BO75351 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS4BO75351 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS4BO75351 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS4BO75351 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
VPS4BO75351 AC092368.3-202ENST00000574180 1591 ntBASIC18.85■□□□□ 0.61
VPS4BO75351 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4BO75351 KRT17P2-201ENST00000300992 1314 ntBASIC18.84■□□□□ 0.61
VPS4BO75351 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms