Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 C1QL1P1-201ENST00000568105 661 ntBASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TMX2-CTNND1H3BSU7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC010947.1-201ENST00000623454 693 ntBASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 AL512408.1-201ENST00000569378 2000 ntBASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.91■□□□□ 0.62
TMX2-CTNND1H3BSU7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 LIN28AP1-201ENST00000429574 405 ntBASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 TUBB8P6-201ENST00000436895 1288 ntBASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 SLC25A3P1-201ENST00000443844 931 ntBASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC131212.4-201ENST00000623606 975 ntBASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TMX2-CTNND1H3BSU7 AC116351.2-201ENST00000606540 1585 ntBASIC18.89■□□□□ 0.62
TMX2-CTNND1H3BSU7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 TERF1P1-201ENST00000311003 1181 ntBASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 AP005242.2-201ENST00000580065 1175 ntBASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 CYP2D8P-201ENST00000433633 1490 ntBASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
TMX2-CTNND1H3BSU7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.88■□□□□ 0.61
TMX2-CTNND1H3BSU7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms