Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.77■□□□□ 0.92
LRRC53A6NM62 AL121829.2-201ENST00000620908 328 ntBASIC20.77■□□□□ 0.92
LRRC53A6NM62 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC53A6NM62 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LRRC53A6NM62 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.77■□□□□ 0.92
LRRC53A6NM62 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC53A6NM62 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC53A6NM62 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC53A6NM62 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LRRC53A6NM62 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.77■□□□□ 0.91
LRRC53A6NM62 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LRRC53A6NM62 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LRRC53A6NM62 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.77■□□□□ 0.91
LRRC53A6NM62 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LRRC53A6NM62 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
LRRC53A6NM62 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LRRC53A6NM62 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LRRC53A6NM62 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.77■□□□□ 0.91
LRRC53A6NM62 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LRRC53A6NM62 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LRRC53A6NM62 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 TUBB8P6-201ENST00000436895 1288 ntBASIC20.75■□□□□ 0.91
LRRC53A6NM62 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 AC008687.6-201ENST00000596318 630 ntBASIC20.75■□□□□ 0.91
LRRC53A6NM62 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 AC104581.1-202ENST00000635932 2618 ntBASIC20.75■□□□□ 0.91
LRRC53A6NM62 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.75■□□□□ 0.91
LRRC53A6NM62 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LRRC53A6NM62 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.74■□□□□ 0.91
LRRC53A6NM62 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRRC53A6NM62 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms