Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TCRBV7S3A2A0A539 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 AC133041.1-202ENST00000642053 222 ntBASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.6■□□□□ 0.73
TCRBV7S3A2A0A539 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 TUBB8P6-201ENST00000436895 1288 ntBASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 AC009113.1-201ENST00000570267 2443 ntBASIC19.59■□□□□ 0.73
TCRBV7S3A2A0A539 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.58■□□□□ 0.73
TCRBV7S3A2A0A539 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.58■□□□□ 0.72
TCRBV7S3A2A0A539 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.57■□□□□ 0.72
TCRBV7S3A2A0A539 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms