Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 AL160286.2-201ENST00000567150 934 ntBASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
UBQLN4Q9NRR5 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 HTR7P1-201ENST00000538670 1336 ntBASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AP002982.1-201ENST00000492365 877 ntBASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 RARRES2P10-201ENST00000564312 460 ntBASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AL353708.3-201ENST00000610272 989 ntBASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
UBQLN4Q9NRR5 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SDHAP1-207ENST00000440850 2000 ntBASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 GCSHP5-201ENST00000443090 522 ntBASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 AC098590.1-201ENST00000468126 897 ntBASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
UBQLN4Q9NRR5 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 AL135905.2-201ENST00000584934 1404 ntBASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 NIFKP9-201ENST00000419265 221 ntBASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 AL158047.1-201ENST00000445918 881 ntBASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 UBE2SP1-201ENST00000450587 669 ntBASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 AL445675.2-201ENST00000620291 557 ntBASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
UBQLN4Q9NRR5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms