Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.14■□□□□ 0.66
TRIM39Q9HCM9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 AC116562.2-201ENST00000507042 360 ntBASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 TREX1-205ENST00000625293 1783 ntBASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM39Q9HCM9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRIM39Q9HCM9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 FSCN1P1-201ENST00000568912 1481 ntBASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 REXO1L10P-201ENST00000615707 1290 ntBASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 REXO1L12P-201ENST00000622156 912 ntBASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.12■□□□□ 0.65
TRIM39Q9HCM9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.11■□□□□ 0.65
TRIM39Q9HCM9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 LINC01465-201ENST00000408887 1940 ntBASIC19.1■□□□□ 0.65
TRIM39Q9HCM9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms