Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC144BQ3MJ40 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 AL049597.2-201ENST00000565575 961 ntBASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC144BQ3MJ40 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC144BQ3MJ40 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC144BQ3MJ40 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.39■■□□□ 1.18
CCDC144BQ3MJ40 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 NAPSB-206ENST00000562112 1266 ntBASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 AC010947.1-201ENST00000623454 693 ntBASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 AC005332.7-201ENST00000614046 2005 ntBASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC144BQ3MJ40 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 ARMC10P1-201ENST00000313754 855 ntBASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
CCDC144BQ3MJ40 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AC113347.1-201ENST00000413321 391 ntBASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 NT5C-211ENST00000582170 653 ntTSL 3 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms