Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SOX3P41225 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SOX3P41225 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 AC005332.7-201ENST00000614046 2005 ntBASIC18.15■□□□□ 0.5
SOX3P41225 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.15■□□□□ 0.5
SOX3P41225 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.15■□□□□ 0.5
SOX3P41225 AC233702.5-201ENST00000584107 538 ntBASIC18.15■□□□□ 0.5
SOX3P41225 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.15■□□□□ 0.5
SOX3P41225 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.15■□□□□ 0.5
SOX3P41225 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SOX3P41225 AL135905.2-201ENST00000584934 1404 ntBASIC18.15■□□□□ 0.5
SOX3P41225 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.14■□□□□ 0.5
SOX3P41225 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX3P41225 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX3P41225 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX3P41225 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.14■□□□□ 0.5
SOX3P41225 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SOX3P41225 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SOX3P41225 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.14■□□□□ 0.49
SOX3P41225 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SOX3P41225 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.14■□□□□ 0.49
SOX3P41225 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.14■□□□□ 0.49
SOX3P41225 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SOX3P41225 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.14■□□□□ 0.49
SOX3P41225 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.14■□□□□ 0.49
SOX3P41225 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.14■□□□□ 0.49
SOX3P41225 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 HTR7P1-201ENST00000538670 1336 ntBASIC18.14■□□□□ 0.49
SOX3P41225 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SOX3P41225 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SOX3P41225 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.14■□□□□ 0.49
SOX3P41225 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SOX3P41225 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SOX3P41225 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.13■□□□□ 0.49
SOX3P41225 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.13■□□□□ 0.49
SOX3P41225 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SOX3P41225 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SOX3P41225 SNORA78-201ENST00000459373 127 ntBASIC18.13■□□□□ 0.49
SOX3P41225 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.13■□□□□ 0.49
SOX3P41225 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.13■□□□□ 0.49
SOX3P41225 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.13■□□□□ 0.49
SOX3P41225 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.13■□□□□ 0.49
SOX3P41225 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SOX3P41225 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SOX3P41225 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SOX3P41225 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SOX3P41225 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.12■□□□□ 0.49
SOX3P41225 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SOX3P41225 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms