Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.79■■□□□ 1.08
CIITAP33076 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.79■■□□□ 1.08
CIITAP33076 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
CIITAP33076 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 MMP23A-201ENST00000234610 1017 ntBASIC21.78■■□□□ 1.08
CIITAP33076 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.78■■□□□ 1.08
CIITAP33076 AC097488.1-201ENST00000507834 756 ntBASIC21.78■■□□□ 1.08
CIITAP33076 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.78■■□□□ 1.08
CIITAP33076 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.78■■□□□ 1.08
CIITAP33076 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
CIITAP33076 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.78■■□□□ 1.08
CIITAP33076 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CIITAP33076 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CIITAP33076 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.77■■□□□ 1.08
CIITAP33076 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CIITAP33076 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.77■■□□□ 1.08
CIITAP33076 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CIITAP33076 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.77■■□□□ 1.08
CIITAP33076 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.77■■□□□ 1.08
CIITAP33076 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CIITAP33076 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CIITAP33076 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
CIITAP33076 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.77■■□□□ 1.08
CIITAP33076 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CIITAP33076 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CIITAP33076 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.07
CIITAP33076 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.77■■□□□ 1.07
CIITAP33076 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CIITAP33076 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
CIITAP33076 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.76■■□□□ 1.07
CIITAP33076 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.76■■□□□ 1.07
CIITAP33076 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.76■■□□□ 1.07
CIITAP33076 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
CIITAP33076 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.76■■□□□ 1.07
CIITAP33076 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.76■■□□□ 1.07
CIITAP33076 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 MIR1238-201ENST00000408483 83 ntBASIC21.76■■□□□ 1.07
CIITAP33076 KRT8P11-201ENST00000409686 1436 ntBASIC21.76■■□□□ 1.07
CIITAP33076 AC087499.1-201ENST00000418141 1075 ntBASIC21.76■■□□□ 1.07
CIITAP33076 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.76■■□□□ 1.07
CIITAP33076 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.76■■□□□ 1.07
CIITAP33076 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.76■■□□□ 1.07
CIITAP33076 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.76■■□□□ 1.07
CIITAP33076 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CIITAP33076 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.76■■□□□ 1.07
CIITAP33076 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CIITAP33076 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 KRT8P9-201ENST00000558927 1449 ntBASIC21.75■■□□□ 1.07
CIITAP33076 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 AL390955.1-201ENST00000428694 934 ntBASIC21.75■■□□□ 1.07
CIITAP33076 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
CIITAP33076 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.75■■□□□ 1.07
CIITAP33076 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.75■■□□□ 1.07
CIITAP33076 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
CIITAP33076 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CIITAP33076 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
CIITAP33076 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CIITAP33076 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CIITAP33076 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms