Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX1P28360 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.7■□□□□ 0.42
MSX1P28360 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.7■□□□□ 0.42
MSX1P28360 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX1P28360 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
MSX1P28360 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MSX1P28360 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX1P28360 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSX1P28360 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
MSX1P28360 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.7■□□□□ 0.42
MSX1P28360 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
MSX1P28360 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX1P28360 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.69■□□□□ 0.42
MSX1P28360 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 AP002982.1-201ENST00000492365 877 ntBASIC17.69■□□□□ 0.42
MSX1P28360 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX1P28360 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
MSX1P28360 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX1P28360 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.69■□□□□ 0.42
MSX1P28360 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
MSX1P28360 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
MSX1P28360 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MSX1P28360 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MSX1P28360 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.69■□□□□ 0.42
MSX1P28360 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.68■□□□□ 0.42
MSX1P28360 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MSX1P28360 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.68■□□□□ 0.42
MSX1P28360 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.68■□□□□ 0.42
MSX1P28360 KSR1P1-201ENST00000446298 240 ntBASIC17.68■□□□□ 0.42
MSX1P28360 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
MSX1P28360 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 AP003071.4-201ENST00000562276 1284 ntBASIC17.68■□□□□ 0.42
MSX1P28360 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
MSX1P28360 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.68■□□□□ 0.42
MSX1P28360 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
MSX1P28360 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSX1P28360 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MSX1P28360 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX1P28360 AFG3L1P-217ENST00000557444 2447 ntBASIC17.67■□□□□ 0.42
MSX1P28360 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.67■□□□□ 0.42
MSX1P28360 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.67■□□□□ 0.42
MSX1P28360 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 NIFKP9-201ENST00000419265 221 ntBASIC17.67■□□□□ 0.42
MSX1P28360 AL355355.2-201ENST00000442321 338 ntBASIC17.67■□□□□ 0.42
MSX1P28360 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.67■□□□□ 0.42
MSX1P28360 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX1P28360 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX1P28360 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.67■□□□□ 0.42
MSX1P28360 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.67■□□□□ 0.42
MSX1P28360 AF186192.3-201ENST00000583427 947 ntBASIC17.67■□□□□ 0.42
MSX1P28360 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 CD177P1-201ENST00000606252 935 ntBASIC17.67■□□□□ 0.42
MSX1P28360 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSX1P28360 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
MSX1P28360 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSX1P28360 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms