Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.31■■□□□ 1.32
COL1A1P02452 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC23.31■■□□□ 1.32
COL1A1P02452 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
COL1A1P02452 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL1A1P02452 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
COL1A1P02452 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC23.3■■□□□ 1.32
COL1A1P02452 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC23.3■■□□□ 1.32
COL1A1P02452 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC23.3■■□□□ 1.32
COL1A1P02452 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.3■■□□□ 1.32
COL1A1P02452 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC23.3■■□□□ 1.32
COL1A1P02452 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
COL1A1P02452 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC23.3■■□□□ 1.32
COL1A1P02452 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC23.3■■□□□ 1.32
COL1A1P02452 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 AP000550.4-202ENST00000639755 178 ntBASIC23.3■■□□□ 1.32
COL1A1P02452 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL1A1P02452 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC23.29■■□□□ 1.32
COL1A1P02452 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
COL1A1P02452 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL1A1P02452 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
COL1A1P02452 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.29■■□□□ 1.32
COL1A1P02452 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.29■■□□□ 1.32
COL1A1P02452 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC23.29■■□□□ 1.32
COL1A1P02452 TSPY23P-201ENST00000440136 739 ntBASIC23.29■■□□□ 1.32
COL1A1P02452 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
COL1A1P02452 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
COL1A1P02452 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.28■■□□□ 1.32
COL1A1P02452 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 MED25-212ENST00000618715 1467 ntTSL 5 BASIC23.28■■□□□ 1.32
COL1A1P02452 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
COL1A1P02452 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
COL1A1P02452 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.28■■□□□ 1.32
COL1A1P02452 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
COL1A1P02452 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.28■■□□□ 1.32
COL1A1P02452 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 CD70-202ENST00000423145 881 ntTSL 2 BASIC23.28■■□□□ 1.32
COL1A1P02452 CA15P1-201ENST00000481698 905 ntBASIC23.28■■□□□ 1.32
COL1A1P02452 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC23.28■■□□□ 1.32
COL1A1P02452 AP003041.3-201ENST00000527151 707 ntBASIC23.28■■□□□ 1.32
COL1A1P02452 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
COL1A1P02452 AL353719.1-201ENST00000566847 864 ntBASIC23.28■■□□□ 1.32
COL1A1P02452 MIR4674-201ENST00000582457 87 ntBASIC23.28■■□□□ 1.32
COL1A1P02452 AC139887.4-201ENST00000607877 719 ntBASIC23.28■■□□□ 1.32
COL1A1P02452 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC23.28■■□□□ 1.32
COL1A1P02452 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC23.28■■□□□ 1.32
COL1A1P02452 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL1A1P02452 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23.27■■□□□ 1.32
COL1A1P02452 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
COL1A1P02452 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.27■■□□□ 1.32
COL1A1P02452 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.27■■□□□ 1.32
COL1A1P02452 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.27■■□□□ 1.32
COL1A1P02452 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC23.27■■□□□ 1.32
COL1A1P02452 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 AC009947.2-201ENST00000444014 672 ntBASIC23.27■■□□□ 1.32
COL1A1P02452 COX11P1-201ENST00000489116 835 ntBASIC23.27■■□□□ 1.32
COL1A1P02452 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.27■■□□□ 1.32
COL1A1P02452 PRSS44-201ENST00000515154 1146 ntBASIC23.27■■□□□ 1.32
COL1A1P02452 CLN6-204ENST00000564752 900 ntTSL 3 BASIC23.27■■□□□ 1.32
COL1A1P02452 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC23.27■■□□□ 1.32
COL1A1P02452 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.27■■□□□ 1.32
COL1A1P02452 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL1A1P02452 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.27■■□□□ 1.31
COL1A1P02452 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL1A1P02452 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms