Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.48■□□□□ 0.55
SEMA3DO95025 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SEMA3DO95025 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.48■□□□□ 0.55
SEMA3DO95025 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.48■□□□□ 0.55
SEMA3DO95025 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SEMA3DO95025 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SEMA3DO95025 BX323043.1-201ENST00000641006 1765 ntBASIC18.47■□□□□ 0.55
SEMA3DO95025 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.47■□□□□ 0.55
SEMA3DO95025 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SEMA3DO95025 AC239809.2-201ENST00000415381 517 ntBASIC18.47■□□□□ 0.55
SEMA3DO95025 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SEMA3DO95025 C1QL1P1-201ENST00000568105 661 ntBASIC18.47■□□□□ 0.55
SEMA3DO95025 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.47■□□□□ 0.55
SEMA3DO95025 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SEMA3DO95025 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SEMA3DO95025 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SEMA3DO95025 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SEMA3DO95025 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SEMA3DO95025 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.46■□□□□ 0.55
SEMA3DO95025 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.46■□□□□ 0.55
SEMA3DO95025 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.46■□□□□ 0.55
SEMA3DO95025 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.46■□□□□ 0.55
SEMA3DO95025 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
SEMA3DO95025 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SEMA3DO95025 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.46■□□□□ 0.55
SEMA3DO95025 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
SEMA3DO95025 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.45■□□□□ 0.54
SEMA3DO95025 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.45■□□□□ 0.54
SEMA3DO95025 AC026471.1-201ENST00000564629 3026 ntBASIC18.45■□□□□ 0.54
SEMA3DO95025 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 AC133681.1-201ENST00000465482 601 ntBASIC18.45■□□□□ 0.54
SEMA3DO95025 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SEMA3DO95025 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SEMA3DO95025 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.45■□□□□ 0.54
SEMA3DO95025 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SEMA3DO95025 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
SEMA3DO95025 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SEMA3DO95025 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms