Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4BO75351 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4BO75351 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS4BO75351 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4BO75351 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 AL355472.2-201ENST00000422958 438 ntBASIC18.91■□□□□ 0.62
VPS4BO75351 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS4BO75351 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS4BO75351 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4BO75351 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4BO75351 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4BO75351 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
VPS4BO75351 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4BO75351 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4BO75351 Z99916.2-201ENST00000604037 246 ntBASIC18.9■□□□□ 0.62
VPS4BO75351 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS4BO75351 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4BO75351 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
VPS4BO75351 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.89■□□□□ 0.62
VPS4BO75351 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS4BO75351 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS4BO75351 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS4BO75351 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS4BO75351 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS4BO75351 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4BO75351 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS4BO75351 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS4BO75351 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4BO75351 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS4BO75351 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.89■□□□□ 0.61
VPS4BO75351 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS4BO75351 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4BO75351 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4BO75351 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
VPS4BO75351 AC018553.1-201ENST00000616682 1458 ntBASIC18.89■□□□□ 0.61
VPS4BO75351 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4BO75351 AC116351.2-201ENST00000606540 1585 ntBASIC18.89■□□□□ 0.61
VPS4BO75351 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4BO75351 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS4BO75351 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VPS4BO75351 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
VPS4BO75351 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4BO75351 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS4BO75351 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms