Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC01465-201ENST00000408887 1940 ntBASIC16.96■□□□□ 0.31
LMX1BO60663 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.96■□□□□ 0.31
LMX1BO60663 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LMX1BO60663 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LMX1BO60663 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.96■□□□□ 0.31
LMX1BO60663 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.96■□□□□ 0.31
LMX1BO60663 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LMX1BO60663 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.96■□□□□ 0.31
LMX1BO60663 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LMX1BO60663 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LMX1BO60663 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
LMX1BO60663 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1BO60663 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1BO60663 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LMX1BO60663 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.96■□□□□ 0.3
LMX1BO60663 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 POM121L13P-201ENST00000422362 380 ntBASIC16.95■□□□□ 0.3
LMX1BO60663 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.95■□□□□ 0.3
LMX1BO60663 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 AC233263.1-201ENST00000578059 224 ntBASIC16.95■□□□□ 0.3
LMX1BO60663 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.95■□□□□ 0.3
LMX1BO60663 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LMX1BO60663 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
LMX1BO60663 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.95■□□□□ 0.3
LMX1BO60663 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LMX1BO60663 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LMX1BO60663 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.94■□□□□ 0.3
LMX1BO60663 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 AL049812.1-201ENST00000432563 2267 ntBASIC16.94■□□□□ 0.3
LMX1BO60663 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 MIR1224-201ENST00000408193 85 ntBASIC16.94■□□□□ 0.3
LMX1BO60663 AC211429.1-201ENST00000415277 523 ntBASIC16.94■□□□□ 0.3
LMX1BO60663 FAM210CP-201ENST00000445714 574 ntBASIC16.94■□□□□ 0.3
LMX1BO60663 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.94■□□□□ 0.3
LMX1BO60663 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.94■□□□□ 0.3
LMX1BO60663 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
LMX1BO60663 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
LMX1BO60663 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.94■□□□□ 0.3
LMX1BO60663 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LMX1BO60663 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
LMX1BO60663 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LMX1BO60663 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.94■□□□□ 0.3
LMX1BO60663 AC124283.5-201ENST00000624661 1809 ntBASIC16.93■□□□□ 0.3
LMX1BO60663 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1BO60663 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms