Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 AC131281.2-201ENST00000520478 145 ntBASIC15.53■□□□□ 0.08
HMGB3O15347 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC15.53■□□□□ 0.08
HMGB3O15347 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
HMGB3O15347 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
HMGB3O15347 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.53■□□□□ 0.08
HMGB3O15347 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.53■□□□□ 0.08
HMGB3O15347 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
HMGB3O15347 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
HMGB3O15347 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
HMGB3O15347 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
HMGB3O15347 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC15.52■□□□□ 0.08
HMGB3O15347 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HMGB3O15347 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.52■□□□□ 0.07
HMGB3O15347 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
HMGB3O15347 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGB3O15347 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGB3O15347 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC15.52■□□□□ 0.07
HMGB3O15347 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HMGB3O15347 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
HMGB3O15347 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HMGB3O15347 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.51■□□□□ 0.07
HMGB3O15347 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
HMGB3O15347 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 UNC93B3-201ENST00000308076 687 ntBASIC15.51■□□□□ 0.07
HMGB3O15347 NAA20-201ENST00000310450 920 ntTSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HMGB3O15347 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 AC120498.10-201ENST00000621827 505 ntBASIC15.51■□□□□ 0.07
HMGB3O15347 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HMGB3O15347 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 CROCCP3-202ENST00000420820 1947 ntBASIC15.51■□□□□ 0.07
HMGB3O15347 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HMGB3O15347 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HMGB3O15347 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.5■□□□□ 0.07
HMGB3O15347 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
HMGB3O15347 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HMGB3O15347 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms