Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC28A1O00337 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC28A1O00337 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC28A1O00337 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SLC28A1O00337 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SLC28A1O00337 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.59■□□□□ 0.57
SLC28A1O00337 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 AL138781.2-201ENST00000617896 1843 ntBASIC18.58■□□□□ 0.57
SLC28A1O00337 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.57
SLC28A1O00337 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SLC28A1O00337 SDHAP1-207ENST00000440850 2000 ntBASIC18.58■□□□□ 0.56
SLC28A1O00337 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.56
SLC28A1O00337 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
SLC28A1O00337 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC28A1O00337 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SLC28A1O00337 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC28A1O00337 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.58■□□□□ 0.56
SLC28A1O00337 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.58■□□□□ 0.56
SLC28A1O00337 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SLC28A1O00337 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.58■□□□□ 0.56
SLC28A1O00337 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 AL049812.1-201ENST00000432563 2267 ntBASIC18.57■□□□□ 0.56
SLC28A1O00337 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 CROCCP3-202ENST00000420820 1947 ntBASIC18.57■□□□□ 0.56
SLC28A1O00337 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.57■□□□□ 0.56
SLC28A1O00337 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.57■□□□□ 0.56
SLC28A1O00337 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
SLC28A1O00337 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 AL138781.1-201ENST00000566567 1274 ntBASIC18.57■□□□□ 0.56
SLC28A1O00337 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.57■□□□□ 0.56
SLC28A1O00337 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SLC28A1O00337 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SLC28A1O00337 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
SLC28A1O00337 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC28A1O00337 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SLC28A1O00337 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.56■□□□□ 0.56
SLC28A1O00337 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC28A1O00337 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.56■□□□□ 0.56
SLC28A1O00337 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC28A1O00337 AC008687.6-201ENST00000596318 630 ntBASIC18.56■□□□□ 0.56
SLC28A1O00337 AC083880.1-201ENST00000608266 535 ntBASIC18.56■□□□□ 0.56
SLC28A1O00337 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.56■□□□□ 0.56
SLC28A1O00337 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 AC006333.2-201ENST00000607957 2099 ntBASIC18.56■□□□□ 0.56
SLC28A1O00337 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
SLC28A1O00337 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SLC28A1O00337 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SLC28A1O00337 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.55■□□□□ 0.56
SLC28A1O00337 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.55■□□□□ 0.56
SLC28A1O00337 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SLC28A1O00337 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms