Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 NOC2LP1-202ENST00000452600 2235 ntBASIC14.13□□□□□ -0.15
SMKR1H3BMG3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SMKR1H3BMG3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 RASA4CP-201ENST00000424092 1398 ntBASIC14.12□□□□□ -0.15
SMKR1H3BMG3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 AC097381.1-201ENST00000429019 1296 ntBASIC14.12□□□□□ -0.15
SMKR1H3BMG3 PBX2P1-201ENST00000493219 1291 ntBASIC14.12□□□□□ -0.15
SMKR1H3BMG3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 AL031963.3-201ENST00000606441 850 ntBASIC14.12□□□□□ -0.15
SMKR1H3BMG3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 BICD1-207ENST00000551848 1962 ntBASIC14.12□□□□□ -0.15
SMKR1H3BMG3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SMKR1H3BMG3 AL031598.1-201ENST00000561511 1773 ntBASIC14.11□□□□□ -0.15
SMKR1H3BMG3 NOC2LP2-201ENST00000407594 1944 ntBASIC14.11□□□□□ -0.15
SMKR1H3BMG3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 AC141586.3-201ENST00000562166 1838 ntBASIC14.11□□□□□ -0.15
SMKR1H3BMG3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 AF213884.3-201ENST00000563833 479 ntBASIC14.11□□□□□ -0.15
SMKR1H3BMG3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.11□□□□□ -0.15
SMKR1H3BMG3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SMKR1H3BMG3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms