Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 ARHGAP42P1-201ENST00000507474 1976 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 Y_RNA.19-201ENST00000362462 99 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 RNU6-82P-201ENST00000363970 107 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 RNU1-24P-201ENST00000364285 165 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 Y_RNA.473-201ENST00000384333 102 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC004980.3-201ENST00000447046 365 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 SNRPFP3-201ENST00000457792 225 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 RNU7-120P-201ENST00000459334 63 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC092824.1-201ENST00000483524 576 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 RPS27P23-201ENST00000487608 251 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC109329.1-201ENST00000518744 317 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC078899.1-201ENST00000521432 1185 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 COX6CP8-201ENST00000522620 226 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC040926.1-201ENST00000530195 238 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC015720.2-201ENST00000567709 334 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC063977.7-201ENST00000594454 337 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC011500.1-201ENST00000601963 469 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC020765.1-201ENST00000604296 328 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC010900.2-201ENST00000604508 210 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 MIR7854-201ENST00000620068 65 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 THUMPD3P1-201ENST00000506556 1480 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 AC130360.2-201ENST00000533477 1556 ntBASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC8.56□□□□□ -1.04
TRIM35Q9UPQ4 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 ERVFRD-3-201ENST00000578561 1617 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 Y_RNA.577-201ENST00000384794 101 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 RN7SKP221-201ENST00000410420 301 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 RPS6P23-201ENST00000413224 722 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 RPL7P49-201ENST00000471402 708 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC090453.1-201ENST00000495560 436 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 SNORA40.15-201ENST00000516884 107 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 OR52K3P-201ENST00000531655 943 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AL627230.1-201ENST00000613077 211 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 U1.41-201ENST00000617626 165 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 AL159972.1-201ENST00000625150 448 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 MTCO1P24-201ENST00000515438 1558 ntBASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
TRIM35Q9UPQ4 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 AC023245.2-201ENST00000530760 2978 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 AC062022.1-201ENST00000451026 1684 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 SNORD35A-201ENST00000363389 86 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RNU6-22P-201ENST00000384355 107 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RNU1-46P-201ENST00000384425 164 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 MIR191-201ENST00000384873 92 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 AL031985.1-201ENST00000392713 418 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 AP000580.1-201ENST00000404439 358 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RNA5SP36-201ENST00000410197 133 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RNU2-28P-201ENST00000410457 189 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 RNU6-55P-201ENST00000411092 107 ntBASIC8.54□□□□□ -1.04
TRIM35Q9UPQ4 AL139156.1-201ENST00000412785 841 ntBASIC8.54□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms