RNA–Protein interactions for RNA: ENST00000578561.1

ERVFRD-3-201, Transcript of endogenous retrovirus group FRD member 3, humanhuman

BASIC

Gene ERVFRD-3, Length 1,617 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERVFRD-3-201ENST00000578561 AEBP2Q6ZN18 517 aaPredicted RBP18.38■□□□□ 0.53
ERVFRD-3-201ENST00000578561 CHIC1Q5VXU3 224 aa17.32■□□□□ 0.36
ERVFRD-3-201ENST00000578561 SENP3Q9H4L4 574 aaPredicted RBP15.88■□□□□ 0.13
ERVFRD-3-201ENST00000578561 PHF23Q9BUL5 403 aaPredicted RBP15.54■□□□□ 0.08
ERVFRD-3-201ENST00000578561 FOXD1Q16676 465 aa14.76□□□□□ -0.05
ERVFRD-3-201ENST00000578561 POTEDQ86YR6 584 aa14.42□□□□□ -0.1
ERVFRD-3-201ENST00000578561 MSH5O43196 834 aa14.1□□□□□ -0.15
ERVFRD-3-201ENST00000578561 PIAS4Q8N2W9 510 aaPredicted RBP13.72□□□□□ -0.21
ERVFRD-3-201ENST00000578561 PLPPR3Q6T4P5 718 aa13.51□□□□□ -0.25
ERVFRD-3-201ENST00000578561 PPP6R1Q9UPN7 881 aa13.41□□□□□ -0.26
ERVFRD-3-201ENST00000578561 ADRA2BP18089 450 aa13.36□□□□□ -0.27
ERVFRD-3-201ENST00000578561 DMRT2Q9Y5R5 561 aa12.49□□□□□ -0.41
ERVFRD-3-201ENST00000578561 SCAF1Q9H7N4 1312 aaKnown RBP12.39□□□□□ -0.43
ERVFRD-3-201ENST00000578561 MAPK8IP2Q13387 824 aaPredicted RBP12.39□□□□□ -0.43
ERVFRD-3-201ENST00000578561 CACNB1Q02641 598 aaPredicted RBP12.33□□□□□ -0.43
ERVFRD-3-201ENST00000578561 DCAF8L1A6NGE4 600 aa12□□□□□ -0.49
ERVFRD-3-201ENST00000578561 RNF39Q9H2S5 420 aa11.93□□□□□ -0.5
ERVFRD-3-201ENST00000578561 HOXD11P31277 338 aaPredicted RBP11.86□□□□□ -0.51
ERVFRD-3-201ENST00000578561 C1QBPQ07021 282 aaKnown RBP11.78□□□□□ -0.52
ERVFRD-3-201ENST00000578561 PPP4R3CPQ6ZMV5 832 aa11.75□□□□□ -0.53
ERVFRD-3-201ENST00000578561 CNKSR2Q8WXI2 1034 aa11.67□□□□□ -0.54
ERVFRD-3-201ENST00000578561 RNF216Q9NWF9 866 aaPredicted RBP11.67□□□□□ -0.54
ERVFRD-3-201ENST00000578561 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
ERVFRD-3-201ENST00000578561 NISCHQ9Y2I1 1504 aa11.52□□□□□ -0.57
ERVFRD-3-201ENST00000578561 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.32□□□□□ -0.6
ERVFRD-3-201ENST00000578561 NCBP3Q53F19 620 aaKnown RBP11.25□□□□□ -0.61
ERVFRD-3-201ENST00000578561 POTEHQ6S545 545 aa11.24□□□□□ -0.61
ERVFRD-3-201ENST00000578561 DSG3P32926 999 aa11□□□□□ -0.65
ERVFRD-3-201ENST00000578561 CAPN15O75808 1086 aa10.99□□□□□ -0.65
ERVFRD-3-201ENST00000578561 NPM3O75607 178 aaKnown RBP10.98□□□□□ -0.65
ERVFRD-3-201ENST00000578561 U3KPZ7 1027 aaPredicted RBP10.97□□□□□ -0.65
ERVFRD-3-201ENST00000578561 SPINK5Q9NQ38 1064 aaPredicted RBP10.92□□□□□ -0.66
ERVFRD-3-201ENST00000578561 APLP2Q06481 763 aa10.8□□□□□ -0.68
ERVFRD-3-201ENST00000578561 ZNF219Q9P2Y4 722 aaPredicted RBP10.73□□□□□ -0.69
ERVFRD-3-201ENST00000578561 TRHP20396 242 aaPredicted RBP10.69□□□□□ -0.7
ERVFRD-3-201ENST00000578561 ABCB7O75027 752 aa10.65□□□□□ -0.7
ERVFRD-3-201ENST00000578561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.64□□□□□ -0.71
ERVFRD-3-201ENST00000578561 HNRNPUL2Q1KMD3 747 aaKnown RBP10.64□□□□□ -0.71
ERVFRD-3-201ENST00000578561 RBM42Q9BTD8 480 aaKnown RBP10.62□□□□□ -0.71
ERVFRD-3-201ENST00000578561 SLC4A2P04920 1241 aa10.57□□□□□ -0.72
ERVFRD-3-201ENST00000578561 SAMD1Q6SPF0 538 aaPredicted RBP10.53□□□□□ -0.72
ERVFRD-3-201ENST00000578561 CHRDL2Q6WN34 429 aa10.48□□□□□ -0.73
ERVFRD-3-201ENST00000578561 KCNA4P22459 653 aa10.47□□□□□ -0.73
ERVFRD-3-201ENST00000578561 SP7Q8TDD2 431 aaPredicted RBP10.34□□□□□ -0.75
ERVFRD-3-201ENST00000578561 POLA2Q14181 598 aa10.29□□□□□ -0.76
ERVFRD-3-201ENST00000578561 AKT1S1Q96B36 256 aa10.24□□□□□ -0.77
ERVFRD-3-201ENST00000578561 MYCNP04198 464 aaPredicted RBP10.22□□□□□ -0.77
ERVFRD-3-201ENST00000578561 ZBTB12Q9Y330 459 aaPredicted RBP10.17□□□□□ -0.78
ERVFRD-3-201ENST00000578561 PIP4P2Q8N4L2 257 aa10.11□□□□□ -0.79
ERVFRD-3-201ENST00000578561 REM2Q8IYK8 340 aaPredicted RBP10.1□□□□□ -0.79
ERVFRD-3-201ENST00000578561 HAX1O00165 279 aa10.08□□□□□ -0.8
ERVFRD-3-201ENST00000578561 FXR2P51116 673 aaKnown RBP eCLIP10□□□□□ -0.81
ERVFRD-3-201ENST00000578561 PITPNM1O00562 1244 aa9.98□□□□□ -0.81
ERVFRD-3-201ENST00000578561 OSCARQ8IYS5 282 aa9.98□□□□□ -0.81
ERVFRD-3-201ENST00000578561 SLC4A1APQ9BWU0 796 aaKnown RBP9.94□□□□□ -0.82
ERVFRD-3-201ENST00000578561 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
ERVFRD-3-201ENST00000578561 FOXD4L1Q9NU39 408 aa9.86□□□□□ -0.83
ERVFRD-3-201ENST00000578561 CCDC180Q9P1Z9 1646 aa9.86□□□□□ -0.83
ERVFRD-3-201ENST00000578561 EVX2Q03828 476 aa9.82□□□□□ -0.84
ERVFRD-3-201ENST00000578561 SPDYE2BA6NHP3 402 aa9.77□□□□□ -0.85
ERVFRD-3-201ENST00000578561 SPDYE6P0CI01 402 aa9.77□□□□□ -0.85
ERVFRD-3-201ENST00000578561 SPDYE2Q495Y8 402 aa9.77□□□□□ -0.85
ERVFRD-3-201ENST00000578561 PRKAR2AP13861 404 aaKnown RBP9.73□□□□□ -0.85
ERVFRD-3-201ENST00000578561 ZCCHC6Q5VYS8 1495 aaKnown RBP9.72□□□□□ -0.85
ERVFRD-3-201ENST00000578561 SPDYE1Q8NFV5 336 aaPredicted RBP9.71□□□□□ -0.85
ERVFRD-3-201ENST00000578561 C19orf67A6NJJ6 358 aa9.71□□□□□ -0.86
ERVFRD-3-201ENST00000578561 FBLN2P98095 1184 aa9.71□□□□□ -0.86
ERVFRD-3-201ENST00000578561 LHX8Q68G74 356 aa9.69□□□□□ -0.86
ERVFRD-3-201ENST00000578561 CLEC11AQ9Y240 323 aa9.67□□□□□ -0.86
ERVFRD-3-201ENST00000578561 PLSCR2Q9NRY7 297 aa9.66□□□□□ -0.86
ERVFRD-3-201ENST00000578561 GABBR2O75899 941 aa9.65□□□□□ -0.86
ERVFRD-3-201ENST00000578561 ATXN8OSP0DMR3 200 aa9.65□□□□□ -0.86
ERVFRD-3-201ENST00000578561 ZBTB22O15209 634 aa9.62□□□□□ -0.87
ERVFRD-3-201ENST00000578561 SHROOM4Q9ULL8 1493 aa9.58□□□□□ -0.88
ERVFRD-3-201ENST00000578561 EHMT2Q96KQ7 1210 aa9.57□□□□□ -0.88
ERVFRD-3-201ENST00000578561 ZNF692Q9BU19 519 aaPredicted RBP9.56□□□□□ -0.88
ERVFRD-3-201ENST00000578561 SSUH2Q9Y2M2 353 aa9.55□□□□□ -0.88
ERVFRD-3-201ENST00000578561 DCAF1Q9Y4B6 1507 aa9.5□□□□□ -0.89
ERVFRD-3-201ENST00000578561 CSRNP3Q8WYN3 585 aa9.49□□□□□ -0.89
ERVFRD-3-201ENST00000578561 CLCN6P51797 869 aa9.49□□□□□ -0.89
ERVFRD-3-201ENST00000578561 CHADLQ6NUI6 762 aa9.49□□□□□ -0.89
ERVFRD-3-201ENST00000578561 PRR29P0C7W0 189 aa9.47□□□□□ -0.89
ERVFRD-3-201ENST00000578561 DCAF8L2P0C7V8 631 aa9.45□□□□□ -0.9
ERVFRD-3-201ENST00000578561 MKRN4PQ13434 485 aaPredicted RBP9.45□□□□□ -0.9
ERVFRD-3-201ENST00000578561 CD44P16070 742 aaKnown RBP9.42□□□□□ -0.9
ERVFRD-3-201ENST00000578561 POTEIP0CG38 1075 aa9.39□□□□□ -0.91
ERVFRD-3-201ENST00000578561 PABPN1Q86U42 306 aaKnown RBP eCLIP9.38□□□□□ -0.91
ERVFRD-3-201ENST00000578561 DCBLD2Q96PD2 775 aa9.35□□□□□ -0.91
ERVFRD-3-201ENST00000578561 FARP1Q9Y4F1 1045 aaPredicted RBP9.35□□□□□ -0.91
ERVFRD-3-201ENST00000578561 SUPT5HO00267 1087 aaKnown RBP9.31□□□□□ -0.92
ERVFRD-3-201ENST00000578561 MYO15BQ96JP2 1530 aa9.3□□□□□ -0.92
ERVFRD-3-201ENST00000578561 ZNF579Q8NAF0 562 aaKnown RBP9.26□□□□□ -0.93
ERVFRD-3-201ENST00000578561 ABCC9O60706 1549 aa9.22□□□□□ -0.93
ERVFRD-3-201ENST00000578561 ZRANB1Q9UGI0 708 aa9.2□□□□□ -0.94
ERVFRD-3-201ENST00000578561 NACADO15069 1562 aa9.17□□□□□ -0.94
ERVFRD-3-201ENST00000578561 OTUD5Q96G74 571 aa9.16□□□□□ -0.94
ERVFRD-3-201ENST00000578561 SCRIBQ14160 1630 aa9.15□□□□□ -0.94
ERVFRD-3-201ENST00000578561 POTEMA6NI47 508 aa9.13□□□□□ -0.95
ERVFRD-3-201ENST00000578561 STAG3Q9UJ98 1225 aa9.13□□□□□ -0.95
ERVFRD-3-201ENST00000578561 GALR2O43603 387 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms