RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 NISCHQ9Y2I1 1504 aa12.83□□□□□ -0.36
VCAN-202ENST00000342785 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
VCAN-202ENST00000342785 SUPT5HO00267 1087 aaKnown RBP12.2□□□□□ -0.46
VCAN-202ENST00000342785 SHROOM4Q9ULL8 1493 aa12.06□□□□□ -0.48
VCAN-202ENST00000342785 EHMT2Q96KQ7 1210 aa11.56□□□□□ -0.56
VCAN-202ENST00000342785 PCGF6Q9BYE7 350 aa11.47□□□□□ -0.57
VCAN-202ENST00000342785 FAM9AQ8IZU1 332 aaPredicted RBP11.44□□□□□ -0.58
VCAN-202ENST00000342785 TRIM41Q8WV44 630 aa11.29□□□□□ -0.6
VCAN-202ENST00000342785 CHIC1Q5VXU3 224 aa11.22□□□□□ -0.61
VCAN-202ENST00000342785 TTBK1Q5TCY1 1321 aaPredicted RBP11.18□□□□□ -0.62
VCAN-202ENST00000342785 APLP2Q06481 763 aa11.18□□□□□ -0.62
VCAN-202ENST00000342785 ZEB1P37275 1124 aaPredicted RBP11.12□□□□□ -0.63
VCAN-202ENST00000342785 LOC105371045A0A1W2PR82 267 aa11.09□□□□□ -0.63
VCAN-202ENST00000342785 HRCP23327 699 aa11.08□□□□□ -0.64
VCAN-202ENST00000342785 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
VCAN-202ENST00000342785 TRIM26Q12899 539 aaPredicted RBP11.03□□□□□ -0.64
VCAN-202ENST00000342785 UBTFP17480 764 aaKnown RBP11.01□□□□□ -0.65
VCAN-202ENST00000342785 RANGAP1P46060 587 aaPredicted RBP11.01□□□□□ -0.65
VCAN-202ENST00000342785 PPARGC1BQ86YN6 1023 aaKnown RBP10.99□□□□□ -0.65
VCAN-202ENST00000342785 CENPBP07199 599 aaPredicted RBP10.91□□□□□ -0.66
VCAN-202ENST00000342785 PELP1Q8IZL8 1130 aaKnown RBP10.89□□□□□ -0.67
VCAN-202ENST00000342785 ATP1B4Q9UN42 357 aaPredicted RBP10.77□□□□□ -0.68
VCAN-202ENST00000342785 YTHDC1Q96MU7 727 aaKnown RBP10.73□□□□□ -0.69
VCAN-202ENST00000342785 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.7□□□□□ -0.7
VCAN-202ENST00000342785 ABCC9O60706 1549 aa10.7□□□□□ -0.7
VCAN-202ENST00000342785 HNRNPUL2Q1KMD3 747 aaKnown RBP10.69□□□□□ -0.7
VCAN-202ENST00000342785 ZCCHC6Q5VYS8 1495 aaKnown RBP10.69□□□□□ -0.7
VCAN-202ENST00000342785 ITGAEP38570 1179 aa10.62□□□□□ -0.71
VCAN-202ENST00000342785 PABPN1Q86U42 306 aaKnown RBP eCLIP10.62□□□□□ -0.71
VCAN-202ENST00000342785 DIEXFQ68CQ4 756 aaKnown RBP10.56□□□□□ -0.72
VCAN-202ENST00000342785 NEFLP07196 543 aa10.51□□□□□ -0.73
VCAN-202ENST00000342785 CSRNP3Q8WYN3 585 aa10.5□□□□□ -0.73
VCAN-202ENST00000342785 DCAF1Q9Y4B6 1507 aa10.47□□□□□ -0.73
VCAN-202ENST00000342785 MYO15BQ96JP2 1530 aa10.43□□□□□ -0.74
VCAN-202ENST00000342785 ERICH6Q7L0X2 663 aa10.4□□□□□ -0.74
VCAN-202ENST00000342785 SCRIBQ14160 1630 aa10.38□□□□□ -0.75
VCAN-202ENST00000342785 CCDC180Q9P1Z9 1646 aa10.38□□□□□ -0.75
VCAN-202ENST00000342785 ZNF316A6NFI3 1004 aaPredicted RBP10.37□□□□□ -0.75
VCAN-202ENST00000342785 GTF3C3Q9Y5Q9 886 aa10.37□□□□□ -0.75
VCAN-202ENST00000342785 FAM50AQ14320 339 aaKnown RBP10.36□□□□□ -0.75
VCAN-202ENST00000342785 RSF1Q96T23 1441 aaPredicted RBP10.36□□□□□ -0.75
VCAN-202ENST00000342785 MYT1Q01538 1121 aa10.34□□□□□ -0.75
VCAN-202ENST00000342785 ACIN1Q9UKV3 1341 aaKnown RBP10.31□□□□□ -0.76
VCAN-202ENST00000342785 NEUROD1Q13562 356 aa10.3□□□□□ -0.76
VCAN-202ENST00000342785 POLR3GLQ9BT43 218 aa10.3□□□□□ -0.76
VCAN-202ENST00000342785 CNGB1Q14028 1251 aaPredicted RBP10.26□□□□□ -0.77
VCAN-202ENST00000342785 P3H3Q8IVL6 736 aa10.24□□□□□ -0.77
VCAN-202ENST00000342785 TRIM52Q96A61 297 aa10.22□□□□□ -0.77
VCAN-202ENST00000342785 BCANQ96GW7 911 aa10.17□□□□□ -0.78
VCAN-202ENST00000342785 ANP32CO43423 234 aa10.16□□□□□ -0.78
VCAN-202ENST00000342785 CECR2Q9BXF3 1484 aa10.14□□□□□ -0.79
VCAN-202ENST00000342785 MYT1LQ9UL68 1186 aa10.13□□□□□ -0.79
VCAN-202ENST00000342785 CLIP1P30622 1438 aa10.13□□□□□ -0.79
VCAN-202ENST00000342785 CEP162Q5TB80 1403 aa10.12□□□□□ -0.79
VCAN-202ENST00000342785 SCAF1Q9H7N4 1312 aaKnown RBP10.12□□□□□ -0.79
VCAN-202ENST00000342785 EEA1Q15075 1411 aa10.11□□□□□ -0.79
VCAN-202ENST00000342785 ARID3CA6NKF2 412 aa10.1□□□□□ -0.79
VCAN-202ENST00000342785 ZNF326Q5BKZ1 582 aaKnown RBP10.09□□□□□ -0.79
VCAN-202ENST00000342785 MIER1Q8N108 512 aa10.08□□□□□ -0.8
VCAN-202ENST00000342785 TNIKQ9UKE5 1360 aa10.08□□□□□ -0.8
VCAN-202ENST00000342785 WRNQ14191 1432 aaPredicted RBP eCLIP10.07□□□□□ -0.8
VCAN-202ENST00000342785 NACADO15069 1562 aa10.06□□□□□ -0.8
VCAN-202ENST00000342785 FBLN2P98095 1184 aa10.06□□□□□ -0.8
VCAN-202ENST00000342785 DDX10Q13206 875 aaKnown RBP10.06□□□□□ -0.8
VCAN-202ENST00000342785 RB1CC1Q8TDY2 1594 aa10.05□□□□□ -0.8
VCAN-202ENST00000342785 GOLGA3Q08378 1498 aa10.05□□□□□ -0.8
VCAN-202ENST00000342785 TONSLQ96HA7 1378 aa10.01□□□□□ -0.81
VCAN-202ENST00000342785 DAXXQ9UER7 740 aaPredicted RBP10□□□□□ -0.81
VCAN-202ENST00000342785 SOGA1O94964 1423 aa9.99□□□□□ -0.81
VCAN-202ENST00000342785 BAZ1AQ9NRL2 1556 aaPredicted RBP9.99□□□□□ -0.81
VCAN-202ENST00000342785 ZNF777Q9ULD5 760 aaPredicted RBP9.98□□□□□ -0.81
VCAN-202ENST00000342785 MROH2BQ7Z745 1585 aa9.98□□□□□ -0.81
VCAN-202ENST00000342785 CDK11AQ9UQ88 783 aaPredicted RBP9.98□□□□□ -0.81
VCAN-202ENST00000342785 CLSPNQ9HAW4 1339 aa9.98□□□□□ -0.81
VCAN-202ENST00000342785 FKBP8Q14318 412 aa9.97□□□□□ -0.81
VCAN-202ENST00000342785 CHIC2Q9UKJ5 165 aa9.97□□□□□ -0.81
VCAN-202ENST00000342785 CEP164Q9UPV0 1460 aa9.97□□□□□ -0.81
VCAN-202ENST00000342785 HIRIP3Q9BW71 556 aaPredicted RBP9.95□□□□□ -0.82
VCAN-202ENST00000342785 HNRNPUQ00839 825 aaKnown RBP eCLIP9.94□□□□□ -0.82
VCAN-202ENST00000342785 SLC4A1APQ9BWU0 796 aaKnown RBP9.94□□□□□ -0.82
VCAN-202ENST00000342785 MTUS2Q5JR59 1369 aa9.94□□□□□ -0.82
VCAN-202ENST00000342785 BAZ1BQ9UIG0 1483 aaKnown RBP9.93□□□□□ -0.82
VCAN-202ENST00000342785 KIF27Q86VH2 1401 aa9.91□□□□□ -0.82
VCAN-202ENST00000342785 RTL5Q5HYW3 569 aaPredicted RBP9.91□□□□□ -0.82
VCAN-202ENST00000342785 CCDC88BA6NC98 1476 aa9.9□□□□□ -0.82
VCAN-202ENST00000342785 FAM9BQ8IZU0 186 aa9.88□□□□□ -0.83
VCAN-202ENST00000342785 RRP7BPQ9NSQ0 103 aa9.87□□□□□ -0.83
VCAN-202ENST00000342785 SIN3AQ96ST3 1273 aa9.85□□□□□ -0.83
VCAN-202ENST00000342785 ABCC8Q09428 1581 aa9.85□□□□□ -0.83
VCAN-202ENST00000342785 VPS8Q8N3P4 1428 aa9.84□□□□□ -0.83
VCAN-202ENST00000342785 MRS2Q9HD23 443 aa9.83□□□□□ -0.84
VCAN-202ENST00000342785 KANK4Q5T7N3 995 aaPredicted RBP9.83□□□□□ -0.84
VCAN-202ENST00000342785 EIF4G2P78344 907 aaKnown RBP eCLIP9.83□□□□□ -0.84
VCAN-202ENST00000342785 CCNB3Q8WWL7 1395 aa9.82□□□□□ -0.84
VCAN-202ENST00000342785 TSPY4P0CV99 314 aa9.81□□□□□ -0.84
VCAN-202ENST00000342785 TSPY10P0CW01 314 aa9.81□□□□□ -0.84
VCAN-202ENST00000342785 CARMIL1Q5VZK9 1371 aa9.79□□□□□ -0.84
VCAN-202ENST00000342785 TMC1Q8TDI8 760 aa9.79□□□□□ -0.84
VCAN-202ENST00000342785 IRX6P78412 446 aaPredicted RBP9.78□□□□□ -0.84
VCAN-202ENST00000342785 KDM2AQ9Y2K7 1162 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms