RNA–Protein interactions for RNA: ENST00000410457.1

RNU2-28P-201, Transcript of RNA, U2 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU2-28P, Length 189 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU2-28P-201ENST00000410457 AEBP2Q6ZN18 517 aaPredicted RBP18.01■□□□□ 0.47
RNU2-28P-201ENST00000410457 CHIC1Q5VXU3 224 aa17■□□□□ 0.31
RNU2-28P-201ENST00000410457 SENP3Q9H4L4 574 aaPredicted RBP15.68■□□□□ 0.1
RNU2-28P-201ENST00000410457 PHF23Q9BUL5 403 aaPredicted RBP15.23■□□□□ 0.03
RNU2-28P-201ENST00000410457 POTEDQ86YR6 584 aa15.04■□□□□ -0
RNU2-28P-201ENST00000410457 FOXD1Q16676 465 aa14.57□□□□□ -0.08
RNU2-28P-201ENST00000410457 MSH5O43196 834 aa14.12□□□□□ -0.15
RNU2-28P-201ENST00000410457 PLPPR3Q6T4P5 718 aa13.98□□□□□ -0.17
RNU2-28P-201ENST00000410457 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.25
RNU2-28P-201ENST00000410457 ADRA2BP18089 450 aa13.01□□□□□ -0.33
RNU2-28P-201ENST00000410457 PPP6R1Q9UPN7 881 aa13.01□□□□□ -0.33
RNU2-28P-201ENST00000410457 KCNA4P22459 653 aa12.55□□□□□ -0.4
RNU2-28P-201ENST00000410457 CACNB1Q02641 598 aaPredicted RBP12.5□□□□□ -0.41
RNU2-28P-201ENST00000410457 PPP4R3CPQ6ZMV5 832 aa12.34□□□□□ -0.43
RNU2-28P-201ENST00000410457 DMRT2Q9Y5R5 561 aa12.27□□□□□ -0.45
RNU2-28P-201ENST00000410457 NCBP3Q53F19 620 aaKnown RBP12.18□□□□□ -0.46
RNU2-28P-201ENST00000410457 EHMT2Q96KQ7 1210 aa12.17□□□□□ -0.46
RNU2-28P-201ENST00000410457 SLC4A1APQ9BWU0 796 aaKnown RBP12.05□□□□□ -0.48
RNU2-28P-201ENST00000410457 MAPK8IP2Q13387 824 aaPredicted RBP11.98□□□□□ -0.49
RNU2-28P-201ENST00000410457 SCAF1Q9H7N4 1312 aaKnown RBP11.97□□□□□ -0.49
RNU2-28P-201ENST00000410457 NPM3O75607 178 aaKnown RBP11.97□□□□□ -0.49
RNU2-28P-201ENST00000410457 CNKSR2Q8WXI2 1034 aa11.93□□□□□ -0.5
RNU2-28P-201ENST00000410457 RNF39Q9H2S5 420 aa11.9□□□□□ -0.5
RNU2-28P-201ENST00000410457 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
RNU2-28P-201ENST00000410457 C1QBPQ07021 282 aaKnown RBP11.74□□□□□ -0.53
RNU2-28P-201ENST00000410457 DCAF8L1A6NGE4 600 aa11.69□□□□□ -0.54
RNU2-28P-201ENST00000410457 DNAJC5BQ9UF47 199 aa11.68□□□□□ -0.54
RNU2-28P-201ENST00000410457 POTEHQ6S545 545 aa11.65□□□□□ -0.54
RNU2-28P-201ENST00000410457 RNF216Q9NWF9 866 aaPredicted RBP11.59□□□□□ -0.55
RNU2-28P-201ENST00000410457 ZBTB22O15209 634 aa11.56□□□□□ -0.56
RNU2-28P-201ENST00000410457 HOXD11P31277 338 aaPredicted RBP11.5□□□□□ -0.57
RNU2-28P-201ENST00000410457 FOXD4L1Q9NU39 408 aa11.46□□□□□ -0.57
RNU2-28P-201ENST00000410457 SLC4A2P04920 1241 aa11.2□□□□□ -0.62
RNU2-28P-201ENST00000410457 MYCNP04198 464 aaPredicted RBP11.08□□□□□ -0.64
RNU2-28P-201ENST00000410457 ATXN8OSP0DMR3 200 aa11.07□□□□□ -0.64
RNU2-28P-201ENST00000410457 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.9□□□□□ -0.66
RNU2-28P-201ENST00000410457 DSG3P32926 999 aa10.83□□□□□ -0.68
RNU2-28P-201ENST00000410457 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.8□□□□□ -0.68
RNU2-28P-201ENST00000410457 HNRNPUL2Q1KMD3 747 aaKnown RBP10.8□□□□□ -0.68
RNU2-28P-201ENST00000410457 SAMD1Q6SPF0 538 aaPredicted RBP10.78□□□□□ -0.68
RNU2-28P-201ENST00000410457 U3KPZ7 1027 aaPredicted RBP10.73□□□□□ -0.69
RNU2-28P-201ENST00000410457 ATF5Q9Y2D1 282 aaPredicted RBP10.7□□□□□ -0.7
RNU2-28P-201ENST00000410457 FKBP8Q14318 412 aa10.68□□□□□ -0.7
RNU2-28P-201ENST00000410457 CAPN15O75808 1086 aa10.67□□□□□ -0.7
RNU2-28P-201ENST00000410457 SPINK5Q9NQ38 1064 aaPredicted RBP10.6□□□□□ -0.71
RNU2-28P-201ENST00000410457 APLP2Q06481 763 aa10.59□□□□□ -0.71
RNU2-28P-201ENST00000410457 AMER1Q5JTC6 1135 aaPredicted RBP10.58□□□□□ -0.72
RNU2-28P-201ENST00000410457 SP7Q8TDD2 431 aaPredicted RBP10.56□□□□□ -0.72
RNU2-28P-201ENST00000410457 RTN4Q9NQC3 1192 aaKnown RBP10.51□□□□□ -0.73
RNU2-28P-201ENST00000410457 ZNF219Q9P2Y4 722 aaPredicted RBP10.51□□□□□ -0.73
RNU2-28P-201ENST00000410457 RBM42Q9BTD8 480 aaKnown RBP10.5□□□□□ -0.73
RNU2-28P-201ENST00000410457 CHRDL2Q6WN34 429 aa10.49□□□□□ -0.73
RNU2-28P-201ENST00000410457 ABCB7O75027 752 aa10.28□□□□□ -0.76
RNU2-28P-201ENST00000410457 MKRN4PQ13434 485 aaPredicted RBP10.28□□□□□ -0.76
RNU2-28P-201ENST00000410457 SPDYE4A6NLX3 237 aa10.27□□□□□ -0.77
RNU2-28P-201ENST00000410457 TRHP20396 242 aaPredicted RBP10.27□□□□□ -0.77
RNU2-28P-201ENST00000410457 FBLN2P98095 1184 aa10.26□□□□□ -0.77
RNU2-28P-201ENST00000410457 SLC24A1O60721 1099 aa10.25□□□□□ -0.77
RNU2-28P-201ENST00000410457 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
RNU2-28P-201ENST00000410457 PROM2Q8N271 834 aa10.23□□□□□ -0.77
RNU2-28P-201ENST00000410457 POLA2Q14181 598 aa10.22□□□□□ -0.77
RNU2-28P-201ENST00000410457 ZBTB12Q9Y330 459 aaPredicted RBP10.16□□□□□ -0.78
RNU2-28P-201ENST00000410457 VASPP50552 380 aaPredicted RBP10.06□□□□□ -0.8
RNU2-28P-201ENST00000410457 HAX1O00165 279 aa10.05□□□□□ -0.8
RNU2-28P-201ENST00000410457 PIP4P2Q8N4L2 257 aa10.02□□□□□ -0.81
RNU2-28P-201ENST00000410457 AKT1S1Q96B36 256 aa10.02□□□□□ -0.81
RNU2-28P-201ENST00000410457 IFNLR1Q8IU57 520 aaPredicted RBP9.95□□□□□ -0.82
RNU2-28P-201ENST00000410457 SPDYE2BA6NHP3 402 aa9.9□□□□□ -0.82
RNU2-28P-201ENST00000410457 SPDYE6P0CI01 402 aa9.9□□□□□ -0.82
RNU2-28P-201ENST00000410457 SPDYE2Q495Y8 402 aa9.9□□□□□ -0.82
RNU2-28P-201ENST00000410457 ZNF692Q9BU19 519 aaPredicted RBP9.89□□□□□ -0.83
RNU2-28P-201ENST00000410457 FXR2P51116 673 aaKnown RBP eCLIP9.87□□□□□ -0.83
RNU2-28P-201ENST00000410457 SSUH2Q9Y2M2 353 aa9.87□□□□□ -0.83
RNU2-28P-201ENST00000410457 OSCARQ8IYS5 282 aa9.86□□□□□ -0.83
RNU2-28P-201ENST00000410457 PLSCR2Q9NRY7 297 aa9.86□□□□□ -0.83
RNU2-28P-201ENST00000410457 LHX8Q68G74 356 aa9.85□□□□□ -0.83
RNU2-28P-201ENST00000410457 REM2Q8IYK8 340 aaPredicted RBP9.85□□□□□ -0.83
RNU2-28P-201ENST00000410457 STAG3Q9UJ98 1225 aa9.85□□□□□ -0.83
RNU2-28P-201ENST00000410457 PKD2Q13563 968 aa9.79□□□□□ -0.84
RNU2-28P-201ENST00000410457 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.85
RNU2-28P-201ENST00000410457 SPOCK2Q92563 424 aa9.76□□□□□ -0.85
RNU2-28P-201ENST00000410457 PITPNM1O00562 1244 aa9.75□□□□□ -0.85
RNU2-28P-201ENST00000410457 EVX2Q03828 476 aa9.75□□□□□ -0.85
RNU2-28P-201ENST00000410457 PLCB2Q00722 1185 aa9.74□□□□□ -0.85
RNU2-28P-201ENST00000410457 KLHL34Q8N239 644 aa9.74□□□□□ -0.85
RNU2-28P-201ENST00000410457 PLCD3Q8N3E9 789 aa9.71□□□□□ -0.86
RNU2-28P-201ENST00000410457 DCAF8L2P0C7V8 631 aa9.69□□□□□ -0.86
RNU2-28P-201ENST00000410457 MIER1Q8N108 512 aa9.66□□□□□ -0.86
RNU2-28P-201ENST00000410457 ZBTB47Q9UFB7 747 aaPredicted RBP9.64□□□□□ -0.87
RNU2-28P-201ENST00000410457 ECM2O94769 699 aaPredicted RBP9.63□□□□□ -0.87
RNU2-28P-201ENST00000410457 PLEKHG5O94827 1062 aa9.63□□□□□ -0.87
RNU2-28P-201ENST00000410457 GABBR2O75899 941 aa9.59□□□□□ -0.87
RNU2-28P-201ENST00000410457 C19orf67A6NJJ6 358 aa9.58□□□□□ -0.88
RNU2-28P-201ENST00000410457 HAP1P54257 671 aaPredicted RBP9.55□□□□□ -0.88
RNU2-28P-201ENST00000410457 BBXQ8WY36 941 aaPredicted RBP9.55□□□□□ -0.88
RNU2-28P-201ENST00000410457 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.53□□□□□ -0.88
RNU2-28P-201ENST00000410457 RGL2O15211 777 aa9.52□□□□□ -0.89
RNU2-28P-201ENST00000410457 TRIM41Q8WV44 630 aa9.52□□□□□ -0.89
RNU2-28P-201ENST00000410457 NPM1P06748 294 aaKnown RBP eCLIP9.49□□□□□ -0.89
RNU2-28P-201ENST00000410457 CIZ1Q9ULV3 898 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms