RNA–Protein interactions for RNA: ENST00000324501.9

PSEN1-201, Transcript of presenilin 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PSEN1, Length 6,078 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-201ENST00000324501 DCAF8L2P0C7V8 631 aa13.26□□□□□ -0.29
PSEN1-201ENST00000324501 NISCHQ9Y2I1 1504 aa13.08□□□□□ -0.32
PSEN1-201ENST00000324501 SHROOM4Q9ULL8 1493 aa12.5□□□□□ -0.41
PSEN1-201ENST00000324501 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
PSEN1-201ENST00000324501 EHMT2Q96KQ7 1210 aa12.13□□□□□ -0.47
PSEN1-201ENST00000324501 FAM9AQ8IZU1 332 aaPredicted RBP11.75□□□□□ -0.53
PSEN1-201ENST00000324501 TTBK1Q5TCY1 1321 aaPredicted RBP11.64□□□□□ -0.55
PSEN1-201ENST00000324501 RANGAP1P46060 587 aaPredicted RBP11.61□□□□□ -0.55
PSEN1-201ENST00000324501 APLP2Q06481 763 aa11.48□□□□□ -0.57
PSEN1-201ENST00000324501 TRIM41Q8WV44 630 aa11.47□□□□□ -0.57
PSEN1-201ENST00000324501 ABCC9O60706 1549 aa11.44□□□□□ -0.58
PSEN1-201ENST00000324501 ATP1B4Q9UN42 357 aaPredicted RBP11.39□□□□□ -0.59
PSEN1-201ENST00000324501 PCGF6Q9BYE7 350 aa11.33□□□□□ -0.6
PSEN1-201ENST00000324501 PABPN1Q86U42 306 aaKnown RBP eCLIP11.32□□□□□ -0.6
PSEN1-201ENST00000324501 UBTFP17480 764 aaKnown RBP11.31□□□□□ -0.6
PSEN1-201ENST00000324501 PPARGC1BQ86YN6 1023 aaKnown RBP11.26□□□□□ -0.61
PSEN1-201ENST00000324501 LOC105371045A0A1W2PR82 267 aa11.1□□□□□ -0.63
PSEN1-201ENST00000324501 CCER1Q8TC90 406 aaPredicted RBP11.08□□□□□ -0.64
PSEN1-201ENST00000324501 CHIC1Q5VXU3 224 aa11.02□□□□□ -0.64
PSEN1-201ENST00000324501 CCDC180Q9P1Z9 1646 aa11.02□□□□□ -0.64
PSEN1-201ENST00000324501 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11□□□□□ -0.65
PSEN1-201ENST00000324501 HNRNPUL2Q1KMD3 747 aaKnown RBP11□□□□□ -0.65
PSEN1-201ENST00000324501 ITGAEP38570 1179 aa10.98□□□□□ -0.65
PSEN1-201ENST00000324501 SCRIBQ14160 1630 aa10.98□□□□□ -0.65
PSEN1-201ENST00000324501 MYT1LQ9UL68 1186 aa10.91□□□□□ -0.66
PSEN1-201ENST00000324501 RB1CC1Q8TDY2 1594 aa10.86□□□□□ -0.67
PSEN1-201ENST00000324501 ZCCHC6Q5VYS8 1495 aaKnown RBP10.83□□□□□ -0.68
PSEN1-201ENST00000324501 TRIM26Q12899 539 aaPredicted RBP10.83□□□□□ -0.68
PSEN1-201ENST00000324501 ZEB1P37275 1124 aaPredicted RBP10.83□□□□□ -0.68
PSEN1-201ENST00000324501 YTHDC1Q96MU7 727 aaKnown RBP10.8□□□□□ -0.68
PSEN1-201ENST00000324501 FBLN2P98095 1184 aa10.8□□□□□ -0.68
PSEN1-201ENST00000324501 PELP1Q8IZL8 1130 aaKnown RBP10.74□□□□□ -0.69
PSEN1-201ENST00000324501 POLR3GLQ9BT43 218 aa10.74□□□□□ -0.69
PSEN1-201ENST00000324501 NACADO15069 1562 aa10.73□□□□□ -0.69
PSEN1-201ENST00000324501 ARID3CA6NKF2 412 aa10.71□□□□□ -0.69
PSEN1-201ENST00000324501 FAM50AQ14320 339 aaKnown RBP10.71□□□□□ -0.69
PSEN1-201ENST00000324501 CNGB1Q14028 1251 aaPredicted RBP10.7□□□□□ -0.7
PSEN1-201ENST00000324501 P3H3Q8IVL6 736 aa10.7□□□□□ -0.7
PSEN1-201ENST00000324501 CENPBP07199 599 aaPredicted RBP10.64□□□□□ -0.71
PSEN1-201ENST00000324501 TRIM52Q96A61 297 aa10.59□□□□□ -0.71
PSEN1-201ENST00000324501 HRCP23327 699 aa10.58□□□□□ -0.72
PSEN1-201ENST00000324501 NEUROD1Q13562 356 aa10.56□□□□□ -0.72
PSEN1-201ENST00000324501 CSRNP3Q8WYN3 585 aa10.54□□□□□ -0.72
PSEN1-201ENST00000324501 SLC4A1APQ9BWU0 796 aaKnown RBP10.54□□□□□ -0.72
PSEN1-201ENST00000324501 ZNF777Q9ULD5 760 aaPredicted RBP10.48□□□□□ -0.73
PSEN1-201ENST00000324501 NEFLP07196 543 aa10.47□□□□□ -0.73
PSEN1-201ENST00000324501 ZNF326Q5BKZ1 582 aaKnown RBP10.47□□□□□ -0.73
PSEN1-201ENST00000324501 NPM1P06748 294 aaKnown RBP eCLIP10.47□□□□□ -0.73
PSEN1-201ENST00000324501 RSF1Q96T23 1441 aaPredicted RBP10.43□□□□□ -0.74
PSEN1-201ENST00000324501 ERICH6Q7L0X2 663 aa10.42□□□□□ -0.74
PSEN1-201ENST00000324501 DCAF1Q9Y4B6 1507 aa10.4□□□□□ -0.74
PSEN1-201ENST00000324501 BAZ1BQ9UIG0 1483 aaKnown RBP10.38□□□□□ -0.75
PSEN1-201ENST00000324501 PLPPR3Q6T4P5 718 aa10.37□□□□□ -0.75
PSEN1-201ENST00000324501 ERCC6Q03468 1493 aa10.37□□□□□ -0.75
PSEN1-201ENST00000324501 CECR2Q9BXF3 1484 aa10.36□□□□□ -0.75
PSEN1-201ENST00000324501 DIEXFQ68CQ4 756 aaKnown RBP10.36□□□□□ -0.75
PSEN1-201ENST00000324501 MYO15BQ96JP2 1530 aa10.34□□□□□ -0.75
PSEN1-201ENST00000324501 CHMP7Q8WUX9 453 aaPredicted RBP10.33□□□□□ -0.76
PSEN1-201ENST00000324501 CDK11AQ9UQ88 783 aaPredicted RBP10.33□□□□□ -0.76
PSEN1-201ENST00000324501 BCANQ96GW7 911 aa10.32□□□□□ -0.76
PSEN1-201ENST00000324501 CHIC2Q9UKJ5 165 aa10.3□□□□□ -0.76
PSEN1-201ENST00000324501 ESF1Q9H501 851 aaKnown RBP10.28□□□□□ -0.76
PSEN1-201ENST00000324501 BAZ1AQ9NRL2 1556 aaPredicted RBP10.24□□□□□ -0.77
PSEN1-201ENST00000324501 WRNQ14191 1432 aaPredicted RBP eCLIP10.24□□□□□ -0.77
PSEN1-201ENST00000324501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.24□□□□□ -0.772e-7■□□□□ 10.6
PSEN1-201ENST00000324501 CHGAP10645 457 aaKnown RBP10.23□□□□□ -0.77
PSEN1-201ENST00000324501 SENP3Q9H4L4 574 aaPredicted RBP10.22□□□□□ -0.77
PSEN1-201ENST00000324501 MROH2BQ7Z745 1585 aa10.22□□□□□ -0.77
PSEN1-201ENST00000324501 KCNH8Q96L42 1107 aa10.21□□□□□ -0.78
PSEN1-201ENST00000324501 CLIP1P30622 1438 aa10.2□□□□□ -0.78
PSEN1-201ENST00000324501 PDS5BQ9NTI5 1447 aa10.2□□□□□ -0.78
PSEN1-201ENST00000324501 SMARCA2P51531 1590 aa10.19□□□□□ -0.78
PSEN1-201ENST00000324501 ANP32CO43423 234 aa10.18□□□□□ -0.78
PSEN1-201ENST00000324501 ZNF316A6NFI3 1004 aaPredicted RBP10.17□□□□□ -0.78
PSEN1-201ENST00000324501 MTUS2Q5JR59 1369 aa10.17□□□□□ -0.78
PSEN1-201ENST00000324501 STAG3Q9UJ98 1225 aa10.16□□□□□ -0.78
PSEN1-201ENST00000324501 GOLGA3Q08378 1498 aa10.16□□□□□ -0.78
PSEN1-201ENST00000324501 WIZO95785 1651 aa10.15□□□□□ -0.78
PSEN1-201ENST00000324501 SLC24A1O60721 1099 aa10.15□□□□□ -0.78
PSEN1-201ENST00000324501 CEP162Q5TB80 1403 aa10.15□□□□□ -0.78
PSEN1-201ENST00000324501 ABCC8Q09428 1581 aa10.15□□□□□ -0.78
PSEN1-201ENST00000324501 CCDC88BA6NC98 1476 aa10.15□□□□□ -0.79
PSEN1-201ENST00000324501 RRP7BPQ9NSQ0 103 aa10.14□□□□□ -0.79
PSEN1-201ENST00000324501 KIF27Q86VH2 1401 aa10.13□□□□□ -0.79
PSEN1-201ENST00000324501 EIF4G1Q04637 1599 aaKnown RBP10.12□□□□□ -0.79
PSEN1-201ENST00000324501 SOGA1O94964 1423 aa10.11□□□□□ -0.79
PSEN1-201ENST00000324501 KDM2AQ9Y2K7 1162 aa10.11□□□□□ -0.79
PSEN1-201ENST00000324501 TONSLQ96HA7 1378 aa10.11□□□□□ -0.79
PSEN1-201ENST00000324501 BCL11AQ9H165 835 aa10.11□□□□□ -0.79
PSEN1-201ENST00000324501 DAXXQ9UER7 740 aaPredicted RBP10.1□□□□□ -0.79
PSEN1-201ENST00000324501 HIRIP3Q9BW71 556 aaPredicted RBP10.08□□□□□ -0.8
PSEN1-201ENST00000324501 CUX2O14529 1486 aa10.08□□□□□ -0.8
PSEN1-201ENST00000324501 TSPY4P0CV99 314 aa10.07□□□□□ -0.8
PSEN1-201ENST00000324501 TSPY10P0CW01 314 aa10.07□□□□□ -0.8
PSEN1-201ENST00000324501 CLSPNQ9HAW4 1339 aa10.07□□□□□ -0.8
PSEN1-201ENST00000324501 PLEKHD1A6NEE1 506 aa10.06□□□□□ -0.8
PSEN1-201ENST00000324501 ACIN1Q9UKV3 1341 aaKnown RBP10.05□□□□□ -0.8
PSEN1-201ENST00000324501 CEP164Q9UPV0 1460 aa10.05□□□□□ -0.8
PSEN1-201ENST00000324501 EEA1Q15075 1411 aa10.05□□□□□ -0.8
PSEN1-201ENST00000324501 DDX10Q13206 875 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms