Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Y_RNA.352-201ENST00000365439 102 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 RNA5SP284-201ENST00000384547 118 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AL024474.1-201ENST00000404655 591 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AL391361.1-201ENST00000405580 489 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 CHEK2P4-201ENST00000450340 246 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AC005229.2-201ENST00000456995 399 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC7.16□□□□□ -1.26
COL9A1P20849 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC7.16□□□□□ -1.26
COL9A1P20849 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 SCG5-207ENST00000497208 949 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 TBCAP3-201ENST00000512475 312 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 SNORA25.14-201ENST00000516481 132 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC7.16□□□□□ -1.26
COL9A1P20849 HMGN1P28-201ENST00000521340 364 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.16□□□□□ -1.26
COL9A1P20849 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC7.16□□□□□ -1.26
COL9A1P20849 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC7.16□□□□□ -1.26
COL9A1P20849 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL9A1P20849 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC7.16□□□□□ -1.26
COL9A1P20849 AC018445.2-201ENST00000622987 260 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 DDX18P3-201ENST00000404856 2007 ntBASIC7.16□□□□□ -1.26
COL9A1P20849 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 PDZK1-202ENST00000417171 2230 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
COL9A1P20849 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 IST1-208ENST00000535424 4082 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 KIF23-203ENST00000395392 3357 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
COL9A1P20849 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
COL9A1P20849 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 LPP-208ENST00000448637 5835 ntTSL 5 BASIC7.15□□□□□ -1.26
COL9A1P20849 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC7.15□□□□□ -1.26
COL9A1P20849 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 LINC02019-201ENST00000608605 2060 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.15□□□□□ -1.26
COL9A1P20849 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC7.15□□□□□ -1.26
COL9A1P20849 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC7.15□□□□□ -1.26
COL9A1P20849 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC7.15□□□□□ -1.26
COL9A1P20849 RNA5SP36-201ENST00000410197 133 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RPL37P18-201ENST00000411602 243 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AL139156.1-201ENST00000412785 841 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RPL30P2-201ENST00000414021 291 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC097713.2-201ENST00000430199 356 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.15□□□□□ -1.26
COL9A1P20849 RAC1P7-201ENST00000445367 377 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC016696.1-201ENST00000446949 318 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC7.15□□□□□ -1.26
COL9A1P20849 AC023141.9-201ENST00000458734 412 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 Y_RNA.644-201ENST00000459006 113 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RNU7-59P-201ENST00000459101 61 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RNU7-167P-201ENST00000459160 62 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC026336.1-201ENST00000466577 351 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RPL17P19-201ENST00000489069 552 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.15□□□□□ -1.26
COL9A1P20849 SNX18P24-201ENST00000505249 671 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC7.15□□□□□ -1.26
COL9A1P20849 Y_RNA.674-201ENST00000516362 113 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 RN7SKP147-201ENST00000517154 244 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC7.15□□□□□ -1.26
COL9A1P20849 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC7.15□□□□□ -1.26
COL9A1P20849 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC7.15□□□□□ -1.26
COL9A1P20849 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 AC025162.2-201ENST00000619602 560 ntBASIC7.15□□□□□ -1.26
COL9A1P20849 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
COL9A1P20849 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL9A1P20849 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC7.15□□□□□ -1.27
COL9A1P20849 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.15□□□□□ -1.27
COL9A1P20849 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL9A1P20849 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
COL9A1P20849 HEATR4-202ENST00000553558 3523 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.27
COL9A1P20849 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
COL9A1P20849 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC7.15□□□□□ -1.27
COL9A1P20849 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC7.15□□□□□ -1.27
COL9A1P20849 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL9A1P20849 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
COL9A1P20849 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.15□□□□□ -1.27
COL9A1P20849 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.15□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms