RNA–Protein interactions for RNA: ENST00000369846.8

LCA5-201, Transcript of LCA5, lebercilin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LCA5, Length 4,542 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCA5-201ENST00000369846 NISCHQ9Y2I1 1504 aa14.24□□□□□ -0.13
LCA5-201ENST00000369846 PELP1Q8IZL8 1130 aaKnown RBP14.06□□□□□ -0.16
LCA5-201ENST00000369846 MYT1Q01538 1121 aa13.95□□□□□ -0.18
LCA5-201ENST00000369846 DCAF8L2P0C7V8 631 aa13.6□□□□□ -0.23
LCA5-201ENST00000369846 ERICH6Q7L0X2 663 aa13.6□□□□□ -0.23
LCA5-201ENST00000369846 SUPT5HO00267 1087 aaKnown RBP13.58□□□□□ -0.24
LCA5-201ENST00000369846 CENPBP07199 599 aaPredicted RBP13.53□□□□□ -0.24
LCA5-201ENST00000369846 PCGF6Q9BYE7 350 aa13.51□□□□□ -0.25
LCA5-201ENST00000369846 EHMT2Q96KQ7 1210 aa13.38□□□□□ -0.27
LCA5-201ENST00000369846 CCER1Q8TC90 406 aaPredicted RBP13.34□□□□□ -0.27
LCA5-201ENST00000369846 YTHDC1Q96MU7 727 aaKnown RBP13.21□□□□□ -0.29
LCA5-201ENST00000369846 ZEB1P37275 1124 aaPredicted RBP13.12□□□□□ -0.31
LCA5-201ENST00000369846 TTBK1Q5TCY1 1321 aaPredicted RBP13.07□□□□□ -0.32
LCA5-201ENST00000369846 SHROOM4Q9ULL8 1493 aa13.06□□□□□ -0.32
LCA5-201ENST00000369846 NEFLP07196 543 aa13.05□□□□□ -0.32
LCA5-201ENST00000369846 HRCP23327 699 aa12.98□□□□□ -0.33
LCA5-201ENST00000369846 FAM9AQ8IZU1 332 aaPredicted RBP12.89□□□□□ -0.35
LCA5-201ENST00000369846 APLP2Q06481 763 aa12.87□□□□□ -0.35
LCA5-201ENST00000369846 PPARGC1BQ86YN6 1023 aaKnown RBP12.86□□□□□ -0.35
LCA5-201ENST00000369846 RTL5Q5HYW3 569 aaPredicted RBP12.72□□□□□ -0.37
LCA5-201ENST00000369846 DAXXQ9UER7 740 aaPredicted RBP12.7□□□□□ -0.38
LCA5-201ENST00000369846 GTF3C3Q9Y5Q9 886 aa12.69□□□□□ -0.38
LCA5-201ENST00000369846 MYO15BQ96JP2 1530 aa12.67□□□□□ -0.38
LCA5-201ENST00000369846 EIF5BO60841 1220 aaKnown RBP12.59□□□□□ -0.39
LCA5-201ENST00000369846 TRIM26Q12899 539 aaPredicted RBP12.58□□□□□ -0.39
LCA5-201ENST00000369846 CHIC1Q5VXU3 224 aa12.54□□□□□ -0.4
LCA5-201ENST00000369846 DIEXFQ68CQ4 756 aaKnown RBP12.51□□□□□ -0.41
LCA5-201ENST00000369846 BCANQ96GW7 911 aa12.5□□□□□ -0.41
LCA5-201ENST00000369846 RANGAP1P46060 587 aaPredicted RBP12.49□□□□□ -0.41
LCA5-201ENST00000369846 LOC105371045A0A1W2PR82 267 aa12.45□□□□□ -0.42
LCA5-201ENST00000369846 ZNF316A6NFI3 1004 aaPredicted RBP12.41□□□□□ -0.42
LCA5-201ENST00000369846 ACIN1Q9UKV3 1341 aaKnown RBP12.4□□□□□ -0.42
LCA5-201ENST00000369846 TRIM41Q8WV44 630 aa12.37□□□□□ -0.43
LCA5-201ENST00000369846 CNGB1Q14028 1251 aaPredicted RBP12.31□□□□□ -0.44
LCA5-201ENST00000369846 GLIPR1L2Q4G1C9 344 aa12.31□□□□□ -0.44
LCA5-201ENST00000369846 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.3□□□□□ -0.44
LCA5-201ENST00000369846 CDK11AQ9UQ88 783 aaPredicted RBP12.28□□□□□ -0.44
LCA5-201ENST00000369846 CLSPNQ9HAW4 1339 aa12.26□□□□□ -0.45
LCA5-201ENST00000369846 UBTFP17480 764 aaKnown RBP12.26□□□□□ -0.45
LCA5-201ENST00000369846 ATP1B4Q9UN42 357 aaPredicted RBP12.24□□□□□ -0.45
LCA5-201ENST00000369846 POLR3GLQ9BT43 218 aa12.23□□□□□ -0.45
LCA5-201ENST00000369846 SCAF1Q9H7N4 1312 aaKnown RBP12.22□□□□□ -0.45
LCA5-201ENST00000369846 HNRNPUL2Q1KMD3 747 aaKnown RBP12.19□□□□□ -0.46
LCA5-201ENST00000369846 ITGAEP38570 1179 aa12.13□□□□□ -0.47
LCA5-201ENST00000369846 BCL11AQ9H165 835 aa12.13□□□□□ -0.47
LCA5-201ENST00000369846 NEUROD1Q13562 356 aa12.13□□□□□ -0.47
LCA5-201ENST00000369846 NBR1Q14596 966 aa12.11□□□□□ -0.47
LCA5-201ENST00000369846 ANP32AP39687 249 aaKnown RBP12.1□□□□□ -0.47
LCA5-201ENST00000369846 DCAF1Q9Y4B6 1507 aa12.08□□□□□ -0.48
LCA5-201ENST00000369846 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
LCA5-201ENST00000369846 MYT1LQ9UL68 1186 aa12.07□□□□□ -0.48
LCA5-201ENST00000369846 NPM2Q86SE8 214 aaKnown RBP12.07□□□□□ -0.48
LCA5-201ENST00000369846 ANP32EQ9BTT0 268 aa12.03□□□□□ -0.48
LCA5-201ENST00000369846 FKBP8Q14318 412 aa12.01□□□□□ -0.49
LCA5-201ENST00000369846 RTN4Q9NQC3 1192 aaKnown RBP11.96□□□□□ -0.5
LCA5-201ENST00000369846 ARXQ96QS3 562 aa11.93□□□□□ -0.5
LCA5-201ENST00000369846 CCDC180Q9P1Z9 1646 aa11.91□□□□□ -0.5
LCA5-201ENST00000369846 ANP32CO43423 234 aa11.91□□□□□ -0.5
LCA5-201ENST00000369846 ZBTB47Q9UFB7 747 aaPredicted RBP11.89□□□□□ -0.51
LCA5-201ENST00000369846 ANP32BQ92688 251 aaKnown RBP11.87□□□□□ -0.51
LCA5-201ENST00000369846 TNNT2P45379 298 aaPredicted RBP11.73□□□□□ -0.53
LCA5-201ENST00000369846 SLC4A1APQ9BWU0 796 aaKnown RBP11.73□□□□□ -0.53
LCA5-201ENST00000369846 NEFMP07197 916 aa11.72□□□□□ -0.53
LCA5-201ENST00000369846 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.72□□□□□ -0.53
LCA5-201ENST00000369846 HSP90AA1P07900 732 aaKnown RBP11.7□□□□□ -0.54
LCA5-201ENST00000369846 TRIM52Q96A61 297 aa11.7□□□□□ -0.54
LCA5-201ENST00000369846 NAP1L5Q96NT1 182 aaPredicted RBP11.7□□□□□ -0.54
LCA5-201ENST00000369846 IRX6P78412 446 aaPredicted RBP11.7□□□□□ -0.54
LCA5-201ENST00000369846 ERICH6BQ5W0A0 696 aa11.7□□□□□ -0.54
LCA5-201ENST00000369846 HNRNPUQ00839 825 aaKnown RBP eCLIP11.7□□□□□ -0.54
LCA5-201ENST00000369846 AMER1Q5JTC6 1135 aaPredicted RBP11.7□□□□□ -0.54
LCA5-201ENST00000369846 CSRNP3Q8WYN3 585 aa11.68□□□□□ -0.54
LCA5-201ENST00000369846 CCDC136Q96JN2 1154 aa11.68□□□□□ -0.54
LCA5-201ENST00000369846 MIER1Q8N108 512 aa11.67□□□□□ -0.54
LCA5-201ENST00000369846 CANXP27824 592 aaKnown RBP11.67□□□□□ -0.54
LCA5-201ENST00000369846 DEKP35659 375 aaKnown RBP11.67□□□□□ -0.54
LCA5-201ENST00000369846 CDK11BP21127 795 aaKnown RBP11.65□□□□□ -0.54
LCA5-201ENST00000369846 TRIM44Q96DX7 344 aaPredicted RBP11.64□□□□□ -0.55
LCA5-201ENST00000369846 UPF2Q9HAU5 1272 aaKnown RBP11.61□□□□□ -0.55
LCA5-201ENST00000369846 DDX10Q13206 875 aaKnown RBP11.59□□□□□ -0.55
LCA5-201ENST00000369846 FAM50AQ14320 339 aaKnown RBP11.59□□□□□ -0.55
LCA5-201ENST00000369846 ZNF326Q5BKZ1 582 aaKnown RBP11.58□□□□□ -0.56
LCA5-201ENST00000369846 ARID4BQ4LE39 1312 aaPredicted RBP11.58□□□□□ -0.56
LCA5-201ENST00000369846 LAS1LQ9Y4W2 734 aaKnown RBP11.58□□□□□ -0.56
LCA5-201ENST00000369846 FAM9BQ8IZU0 186 aa11.57□□□□□ -0.56
LCA5-201ENST00000369846 RSF1Q96T23 1441 aaPredicted RBP11.55□□□□□ -0.56
LCA5-201ENST00000369846 RB1CC1Q8TDY2 1594 aa11.55□□□□□ -0.56
LCA5-201ENST00000369846 SALL2Q9Y467 1007 aaPredicted RBP11.54□□□□□ -0.56
LCA5-201ENST00000369846 NOP58Q9Y2X3 529 aaKnown RBP11.51□□□□□ -0.57
LCA5-201ENST00000369846 PPM1GO15355 546 aaPredicted RBP11.5□□□□□ -0.57
LCA5-201ENST00000369846 SUPT16HQ9Y5B9 1047 aaKnown RBP11.49□□□□□ -0.57
LCA5-201ENST00000369846 DNTTIP2Q5QJE6 756 aaKnown RBP11.49□□□□□ -0.57
LCA5-201ENST00000369846 RBM19Q9Y4C8 960 aaKnown RBP11.47□□□□□ -0.57
LCA5-201ENST00000369846 VSIG10Q8N0Z9 540 aa11.47□□□□□ -0.57
LCA5-201ENST00000369846 PRKCSHP14314 528 aaPredicted RBP11.46□□□□□ -0.57
LCA5-201ENST00000369846 ABCC9O60706 1549 aa11.46□□□□□ -0.58
LCA5-201ENST00000369846 SCRIBQ14160 1630 aa11.45□□□□□ -0.58
LCA5-201ENST00000369846 DDRGK1Q96HY6 314 aa11.45□□□□□ -0.58
LCA5-201ENST00000369846 PTMAP06454 111 aaKnown RBP11.43□□□□□ -0.58
LCA5-201ENST00000369846 ARID3AQ99856 593 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms