RNA–Protein interactions for RNA: ENST00000304449.5

NKRF-201, Transcript of NFKB repressing factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NKRF, Length 3,269 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKRF-201ENST00000304449 NISCHQ9Y2I1 1504 aa16.39■□□□□ 0.21
NKRF-201ENST00000304449 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
NKRF-201ENST00000304449 ZCCHC6Q5VYS8 1495 aaKnown RBP13.93□□□□□ -0.18
NKRF-201ENST00000304449 SHROOM4Q9ULL8 1493 aa13.77□□□□□ -0.21
NKRF-201ENST00000304449 DCAF1Q9Y4B6 1507 aa13.55□□□□□ -0.24
NKRF-201ENST00000304449 SUPT5HO00267 1087 aaKnown RBP13.5□□□□□ -0.25
NKRF-201ENST00000304449 MYO15BQ96JP2 1530 aa13.44□□□□□ -0.26
NKRF-201ENST00000304449 CHIC1Q5VXU3 224 aa13.36□□□□□ -0.27
NKRF-201ENST00000304449 HRCP23327 699 aa13.26□□□□□ -0.29
NKRF-201ENST00000304449 PPARGC1BQ86YN6 1023 aaKnown RBP13.24□□□□□ -0.29
NKRF-201ENST00000304449 PCGF6Q9BYE7 350 aa13.17□□□□□ -0.3
NKRF-201ENST00000304449 ABCC9O60706 1549 aa13.16□□□□□ -0.3
NKRF-201ENST00000304449 DCAF8L2P0C7V8 631 aa13.12□□□□□ -0.31
NKRF-201ENST00000304449 RSF1Q96T23 1441 aaPredicted RBP12.98□□□□□ -0.33
NKRF-201ENST00000304449 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
NKRF-201ENST00000304449 LOC105371045A0A1W2PR82 267 aa12.89□□□□□ -0.35
NKRF-201ENST00000304449 RB1CC1Q8TDY2 1594 aa12.88□□□□□ -0.35
NKRF-201ENST00000304449 PELP1Q8IZL8 1130 aaKnown RBP12.86□□□□□ -0.35
NKRF-201ENST00000304449 NACADO15069 1562 aa12.82□□□□□ -0.36
NKRF-201ENST00000304449 CECR2Q9BXF3 1484 aa12.74□□□□□ -0.37
NKRF-201ENST00000304449 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
NKRF-201ENST00000304449 TRIM26Q12899 539 aaPredicted RBP12.72□□□□□ -0.37
NKRF-201ENST00000304449 EIF4G1Q04637 1599 aaKnown RBP12.71□□□□□ -0.37
NKRF-201ENST00000304449 SCAF1Q9H7N4 1312 aaKnown RBP12.69□□□□□ -0.38
NKRF-201ENST00000304449 WIZO95785 1651 aa12.67□□□□□ -0.38
NKRF-201ENST00000304449 BAZ1AQ9NRL2 1556 aaPredicted RBP12.64□□□□□ -0.39
NKRF-201ENST00000304449 TRIM41Q8WV44 630 aa12.61□□□□□ -0.39
NKRF-201ENST00000304449 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
NKRF-201ENST00000304449 TOP2AP11388 1531 aaKnown RBP12.49□□□□□ -0.41
NKRF-201ENST00000304449 SMARCA4P51532 1647 aa12.47□□□□□ -0.41
NKRF-201ENST00000304449 SMARCA2P51531 1590 aa12.44□□□□□ -0.42
NKRF-201ENST00000304449 ZEB1P37275 1124 aaPredicted RBP12.44□□□□□ -0.42
NKRF-201ENST00000304449 FAM9AQ8IZU1 332 aaPredicted RBP12.42□□□□□ -0.42
NKRF-201ENST00000304449 EHMT2Q96KQ7 1210 aa12.42□□□□□ -0.42
NKRF-201ENST00000304449 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
NKRF-201ENST00000304449 ABCC8Q09428 1581 aa12.37□□□□□ -0.43
NKRF-201ENST00000304449 WRNQ14191 1432 aaPredicted RBP eCLIP12.36□□□□□ -0.43
NKRF-201ENST00000304449 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
NKRF-201ENST00000304449 GTF3C3Q9Y5Q9 886 aa12.34□□□□□ -0.43
NKRF-201ENST00000304449 PEG3Q9GZU2 1588 aa12.33□□□□□ -0.44
NKRF-201ENST00000304449 MYT1Q01538 1121 aa12.32□□□□□ -0.44
NKRF-201ENST00000304449 BICRAQ9NZM4 1560 aa12.32□□□□□ -0.44
NKRF-201ENST00000304449 ACIN1Q9UKV3 1341 aaKnown RBP12.3□□□□□ -0.44
NKRF-201ENST00000304449 SOGA1O94964 1423 aa12.26□□□□□ -0.45
NKRF-201ENST00000304449 TNIKQ9UKE5 1360 aa12.24□□□□□ -0.45
NKRF-201ENST00000304449 EEA1Q15075 1411 aa12.23□□□□□ -0.45
NKRF-201ENST00000304449 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
NKRF-201ENST00000304449 RUSC2Q8N2Y8 1516 aa12.23□□□□□ -0.45
NKRF-201ENST00000304449 CENPBP07199 599 aaPredicted RBP12.18□□□□□ -0.46
NKRF-201ENST00000304449 YTHDC1Q96MU7 727 aaKnown RBP12.18□□□□□ -0.46
NKRF-201ENST00000304449 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.17□□□□□ -0.46
NKRF-201ENST00000304449 SYNJ1O43426 1573 aa12.15□□□□□ -0.46
NKRF-201ENST00000304449 KIF21BO75037 1637 aa12.15□□□□□ -0.47
NKRF-201ENST00000304449 CCER1Q8TC90 406 aaPredicted RBP12.13□□□□□ -0.47
NKRF-201ENST00000304449 GOLGA3Q08378 1498 aa12.12□□□□□ -0.47
NKRF-201ENST00000304449 CSRNP3Q8WYN3 585 aa12.12□□□□□ -0.47
NKRF-201ENST00000304449 DIEXFQ68CQ4 756 aaKnown RBP12.11□□□□□ -0.47
NKRF-201ENST00000304449 TTBK1Q5TCY1 1321 aaPredicted RBP12.1□□□□□ -0.47
NKRF-201ENST00000304449 ATAD2BQ9ULI0 1458 aa12.09□□□□□ -0.47
NKRF-201ENST00000304449 CEP164Q9UPV0 1460 aa12.05□□□□□ -0.48
NKRF-201ENST00000304449 BAZ1BQ9UIG0 1483 aaKnown RBP12.03□□□□□ -0.48
NKRF-201ENST00000304449 TOP2BQ02880 1626 aa12.02□□□□□ -0.49
NKRF-201ENST00000304449 BIVM-ERCC5R4GMW8 1640 aa12.01□□□□□ -0.49
NKRF-201ENST00000304449 PABPN1Q86U42 306 aaKnown RBP eCLIP12.01□□□□□ -0.49
NKRF-201ENST00000304449 AEBP2Q6ZN18 517 aaPredicted RBP12□□□□□ -0.49
NKRF-201ENST00000304449 RAPGEF2Q9Y4G8 1499 aa11.97□□□□□ -0.49
NKRF-201ENST00000304449 VPS8Q8N3P4 1428 aa11.97□□□□□ -0.49
NKRF-201ENST00000304449 CLIP1P30622 1438 aa11.96□□□□□ -0.49
NKRF-201ENST00000304449 UBTFP17480 764 aaKnown RBP11.93□□□□□ -0.5
NKRF-201ENST00000304449 ERICH3Q5RHP9 1530 aa11.92□□□□□ -0.5
NKRF-201ENST00000304449 PRXQ9BXM0 1461 aa11.91□□□□□ -0.5
NKRF-201ENST00000304449 HMGXB3Q12766 1538 aa11.9□□□□□ -0.5
NKRF-201ENST00000304449 NCAPD3P42695 1498 aa11.86□□□□□ -0.51
NKRF-201ENST00000304449 ARAP1Q96P48 1450 aa11.86□□□□□ -0.51
NKRF-201ENST00000304449 CUX1P39880 1505 aa11.85□□□□□ -0.51
NKRF-201ENST00000304449 ZNF316A6NFI3 1004 aaPredicted RBP11.85□□□□□ -0.51
NKRF-201ENST00000304449 PRDM2Q13029 1718 aa11.8□□□□□ -0.52
NKRF-201ENST00000304449 MIER1Q8N108 512 aa11.8□□□□□ -0.52
NKRF-201ENST00000304449 CFTRP13569 1480 aa11.8□□□□□ -0.52
NKRF-201ENST00000304449 CUX2O14529 1486 aa11.78□□□□□ -0.52
NKRF-201ENST00000304449 BCL11AQ9H165 835 aa11.78□□□□□ -0.52
NKRF-201ENST00000304449 RRBP1Q9P2E9 1410 aaKnown RBP11.77□□□□□ -0.53
NKRF-201ENST00000304449 DHX57Q6P158 1386 aaKnown RBP11.74□□□□□ -0.53
NKRF-201ENST00000304449 HNRNPUL2Q1KMD3 747 aaKnown RBP11.74□□□□□ -0.53
NKRF-201ENST00000304449 CLSPNQ9HAW4 1339 aa11.73□□□□□ -0.53
NKRF-201ENST00000304449 ARHGAP35Q9NRY4 1499 aa11.72□□□□□ -0.53
NKRF-201ENST00000304449 KANK4Q5T7N3 995 aaPredicted RBP11.71□□□□□ -0.54
NKRF-201ENST00000304449 KIF27Q86VH2 1401 aa11.7□□□□□ -0.54
NKRF-201ENST00000304449 MAP3K1Q13233 1512 aa11.68□□□□□ -0.54
NKRF-201ENST00000304449 ANP32EQ9BTT0 268 aa11.65□□□□□ -0.54
NKRF-201ENST00000304449 IGF1RP08069 1367 aa11.64□□□□□ -0.55
NKRF-201ENST00000304449 BCANQ96GW7 911 aa11.63□□□□□ -0.55
NKRF-201ENST00000304449 TIAM1Q13009 1591 aa11.62□□□□□ -0.55
NKRF-201ENST00000304449 APLP2Q06481 763 aa11.62□□□□□ -0.55
NKRF-201ENST00000304449 MAPKBP1O60336 1514 aa11.61□□□□□ -0.55
NKRF-201ENST00000304449 SUPT16HQ9Y5B9 1047 aaKnown RBP11.61□□□□□ -0.55
NKRF-201ENST00000304449 CCNB3Q8WWL7 1395 aa11.6□□□□□ -0.55
NKRF-201ENST00000304449 CFAP43Q8NDM7 1665 aa11.59□□□□□ -0.55
NKRF-201ENST00000304449 TSHZ2Q9NRE2 1034 aa11.59□□□□□ -0.55
NKRF-201ENST00000304449 RANGAP1P46060 587 aaPredicted RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms