RNA–Protein interactions for RNA: ENST00000488961.5

BEST3-205, Transcript of bestrophin 3, humanhuman

TSL 1 (best) BASIC

Gene BEST3, Length 2,878 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-205ENST00000488961 NISCHQ9Y2I1 1504 aa15.51■□□□□ 0.07
BEST3-205ENST00000488961 SHROOM4Q9ULL8 1493 aa13.87□□□□□ -0.19
BEST3-205ENST00000488961 DCAF8L2P0C7V8 631 aa13.68□□□□□ -0.22
BEST3-205ENST00000488961 SUPT5HO00267 1087 aaKnown RBP13.53□□□□□ -0.24
BEST3-205ENST00000488961 ZCCHC6Q5VYS8 1495 aaKnown RBP13.04□□□□□ -0.32
BEST3-205ENST00000488961 CCDC180Q9P1Z9 1646 aa12.96□□□□□ -0.33
BEST3-205ENST00000488961 PELP1Q8IZL8 1130 aaKnown RBP12.83□□□□□ -0.36
BEST3-205ENST00000488961 EHMT2Q96KQ7 1210 aa12.83□□□□□ -0.36
BEST3-205ENST00000488961 MYO15BQ96JP2 1530 aa12.81□□□□□ -0.36
BEST3-205ENST00000488961 CHIC1Q5VXU3 224 aa12.8□□□□□ -0.36
BEST3-205ENST00000488961 LOC105371045A0A1W2PR82 267 aa12.72□□□□□ -0.37
BEST3-205ENST00000488961 ABCC9O60706 1549 aa12.72□□□□□ -0.37
BEST3-205ENST00000488961 SCRIBQ14160 1630 aa12.66□□□□□ -0.38
BEST3-205ENST00000488961 FAM9AQ8IZU1 332 aaPredicted RBP12.63□□□□□ -0.39
BEST3-205ENST00000488961 PCGF6Q9BYE7 350 aa12.58□□□□□ -0.4
BEST3-205ENST00000488961 HRCP23327 699 aa12.54□□□□□ -0.4
BEST3-205ENST00000488961 MYT1Q01538 1121 aa12.45□□□□□ -0.42
BEST3-205ENST00000488961 PPARGC1BQ86YN6 1023 aaKnown RBP12.42□□□□□ -0.42
BEST3-205ENST00000488961 DCAF1Q9Y4B6 1507 aa12.38□□□□□ -0.43
BEST3-205ENST00000488961 CECR2Q9BXF3 1484 aa12.37□□□□□ -0.43
BEST3-205ENST00000488961 TRIM41Q8WV44 630 aa12.37□□□□□ -0.43
BEST3-205ENST00000488961 RSF1Q96T23 1441 aaPredicted RBP12.36□□□□□ -0.43
BEST3-205ENST00000488961 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
BEST3-205ENST00000488961 RB1CC1Q8TDY2 1594 aa12.32□□□□□ -0.44
BEST3-205ENST00000488961 TTBK1Q5TCY1 1321 aaPredicted RBP12.32□□□□□ -0.44
BEST3-205ENST00000488961 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
BEST3-205ENST00000488961 MROH2BQ7Z745 1585 aa12.22□□□□□ -0.45
BEST3-205ENST00000488961 WIZO95785 1651 aa12.2□□□□□ -0.46
BEST3-205ENST00000488961 NACADO15069 1562 aa12.08□□□□□ -0.47
BEST3-205ENST00000488961 RANGAP1P46060 587 aaPredicted RBP12.08□□□□□ -0.48
BEST3-205ENST00000488961 ABCC8Q09428 1581 aa12.02□□□□□ -0.49
BEST3-205ENST00000488961 TRIM26Q12899 539 aaPredicted RBP12.02□□□□□ -0.49
BEST3-205ENST00000488961 UNC13AQ9UPW8 1703 aa11.97□□□□□ -0.49
BEST3-205ENST00000488961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.91□□□□□ -0.5
BEST3-205ENST00000488961 CCDC88BA6NC98 1476 aa11.9□□□□□ -0.5
BEST3-205ENST00000488961 UBTFP17480 764 aaKnown RBP11.89□□□□□ -0.51
BEST3-205ENST00000488961 RUSC2Q8N2Y8 1516 aa11.88□□□□□ -0.51
BEST3-205ENST00000488961 SOGA1O94964 1423 aa11.87□□□□□ -0.51
BEST3-205ENST00000488961 BAZ1AQ9NRL2 1556 aaPredicted RBP11.86□□□□□ -0.51
BEST3-205ENST00000488961 SLC24A1O60721 1099 aa11.85□□□□□ -0.51
BEST3-205ENST00000488961 SMARCA4P51532 1647 aa11.84□□□□□ -0.51
BEST3-205ENST00000488961 PRKCSHP14314 528 aaPredicted RBP11.78□□□□□ -0.52
BEST3-205ENST00000488961 BCL11AQ9H165 835 aa11.78□□□□□ -0.52
BEST3-205ENST00000488961 SMARCA2P51531 1590 aa11.78□□□□□ -0.52
BEST3-205ENST00000488961 BICRAQ9NZM4 1560 aa11.78□□□□□ -0.52
BEST3-205ENST00000488961 TOP2AP11388 1531 aaKnown RBP11.75□□□□□ -0.53
BEST3-205ENST00000488961 CCER1Q8TC90 406 aaPredicted RBP11.74□□□□□ -0.53
BEST3-205ENST00000488961 ACIN1Q9UKV3 1341 aaKnown RBP11.71□□□□□ -0.53
BEST3-205ENST00000488961 NEUROD1Q13562 356 aa11.71□□□□□ -0.54
BEST3-205ENST00000488961 CSRNP3Q8WYN3 585 aa11.71□□□□□ -0.54
BEST3-205ENST00000488961 EIF4G1Q04637 1599 aaKnown RBP11.7□□□□□ -0.54
BEST3-205ENST00000488961 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
BEST3-205ENST00000488961 HNRNPUL2Q1KMD3 747 aaKnown RBP11.69□□□□□ -0.54
BEST3-205ENST00000488961 CEP162Q5TB80 1403 aa11.67□□□□□ -0.54
BEST3-205ENST00000488961 WRNQ14191 1432 aaPredicted RBP eCLIP11.63□□□□□ -0.55
BEST3-205ENST00000488961 BAZ1BQ9UIG0 1483 aaKnown RBP11.62□□□□□ -0.55
BEST3-205ENST00000488961 ATAD2BQ9ULI0 1458 aa11.6□□□□□ -0.55
BEST3-205ENST00000488961 SYNJ1O43426 1573 aa11.6□□□□□ -0.55
BEST3-205ENST00000488961 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
BEST3-205ENST00000488961 ITGAEP38570 1179 aa11.54□□□□□ -0.56
BEST3-205ENST00000488961 ZEB1P37275 1124 aaPredicted RBP11.53□□□□□ -0.56
BEST3-205ENST00000488961 RAPGEF2Q9Y4G8 1499 aa11.52□□□□□ -0.57
BEST3-205ENST00000488961 ATP1B4Q9UN42 357 aaPredicted RBP11.5□□□□□ -0.57
BEST3-205ENST00000488961 P3H3Q8IVL6 736 aa11.49□□□□□ -0.57
BEST3-205ENST00000488961 TNIKQ9UKE5 1360 aa11.49□□□□□ -0.57
BEST3-205ENST00000488961 APLP2Q06481 763 aa11.48□□□□□ -0.57
BEST3-205ENST00000488961 GOLGA3Q08378 1498 aa11.47□□□□□ -0.57
BEST3-205ENST00000488961 YTHDC1Q96MU7 727 aaKnown RBP11.46□□□□□ -0.57
BEST3-205ENST00000488961 DNAJC5BQ9UF47 199 aa11.46□□□□□ -0.57
BEST3-205ENST00000488961 CLIP1P30622 1438 aa11.46□□□□□ -0.57
BEST3-205ENST00000488961 KANK4Q5T7N3 995 aaPredicted RBP11.42□□□□□ -0.58
BEST3-205ENST00000488961 DIEXFQ68CQ4 756 aaKnown RBP11.39□□□□□ -0.59
BEST3-205ENST00000488961 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
BEST3-205ENST00000488961 PEG3Q9GZU2 1588 aa11.38□□□□□ -0.59
BEST3-205ENST00000488961 ANP32EQ9BTT0 268 aa11.35□□□□□ -0.59
BEST3-205ENST00000488961 CUX1P39880 1505 aa11.34□□□□□ -0.59
BEST3-205ENST00000488961 EEA1Q15075 1411 aa11.33□□□□□ -0.6
BEST3-205ENST00000488961 ERICH6Q7L0X2 663 aa11.33□□□□□ -0.6
BEST3-205ENST00000488961 ARID3CA6NKF2 412 aa11.31□□□□□ -0.6
BEST3-205ENST00000488961 NESP48681 1621 aa11.3□□□□□ -0.6
BEST3-205ENST00000488961 KIF21BO75037 1637 aa11.29□□□□□ -0.6
BEST3-205ENST00000488961 TOP2BQ02880 1626 aa11.29□□□□□ -0.6
BEST3-205ENST00000488961 VPS8Q8N3P4 1428 aa11.28□□□□□ -0.6
BEST3-205ENST00000488961 CUX2O14529 1486 aa11.28□□□□□ -0.6
BEST3-205ENST00000488961 ARAP1Q96P48 1450 aa11.26□□□□□ -0.61
BEST3-205ENST00000488961 NCAPD3P42695 1498 aa11.26□□□□□ -0.61
BEST3-205ENST00000488961 AEBP2Q6ZN18 517 aaPredicted RBP11.25□□□□□ -0.61
BEST3-205ENST00000488961 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
BEST3-205ENST00000488961 MIER1Q8N108 512 aa11.24□□□□□ -0.61
BEST3-205ENST00000488961 RAD54L2Q9Y4B4 1467 aa11.24□□□□□ -0.61
BEST3-205ENST00000488961 CC2D2AQ9P2K1 1620 aa11.23□□□□□ -0.61
BEST3-205ENST00000488961 ZNF316A6NFI3 1004 aaPredicted RBP11.22□□□□□ -0.61
BEST3-205ENST00000488961 KIF27Q86VH2 1401 aa11.22□□□□□ -0.61
BEST3-205ENST00000488961 HIRIP3Q9BW71 556 aaPredicted RBP11.21□□□□□ -0.61
BEST3-205ENST00000488961 CFTRP13569 1480 aa11.21□□□□□ -0.62
BEST3-205ENST00000488961 FGD5Q6ZNL6 1462 aa11.19□□□□□ -0.62
BEST3-205ENST00000488961 PRXQ9BXM0 1461 aa11.19□□□□□ -0.62
BEST3-205ENST00000488961 BIVM-ERCC5R4GMW8 1640 aa11.18□□□□□ -0.62
BEST3-205ENST00000488961 CADPSQ9ULU8 1353 aa11.18□□□□□ -0.62
BEST3-205ENST00000488961 IGF1RP08069 1367 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms