Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 ESRRAP1-201ENST00000400596 1257 ntBASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS9D1Q9Y2B5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 AC141586.3-201ENST00000562166 1838 ntBASIC19.21■□□□□ 0.67
VPS9D1Q9Y2B5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 AC239809.2-201ENST00000415381 517 ntBASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS9D1Q9Y2B5 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 LINC01465-201ENST00000408887 1940 ntBASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 C1QL1P1-201ENST00000568105 661 ntBASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
VPS9D1Q9Y2B5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS9D1Q9Y2B5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms