Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 UNC93B4-201ENST00000505679 747 ntBASIC15.64■□□□□ 0.09
FOXA2Q9Y261 AP003097.1-201ENST00000530657 1135 ntBASIC15.64■□□□□ 0.09
FOXA2Q9Y261 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
FOXA2Q9Y261 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
FOXA2Q9Y261 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC026366.1-201ENST00000488803 879 ntBASIC15.62■□□□□ 0.09
FOXA2Q9Y261 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 MAX-217ENST00000557277 728 ntTSL 3 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AC008687.6-201ENST00000596318 630 ntBASIC15.62■□□□□ 0.09
FOXA2Q9Y261 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
FOXA2Q9Y261 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 AC141586.3-201ENST00000562166 1838 ntBASIC15.61■□□□□ 0.09
FOXA2Q9Y261 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
FOXA2Q9Y261 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms