Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 KRT16P1-201ENST00000399124 1418 ntBASIC22.24■■□□□ 1.15
DDX41Q9UJV9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 C1QL1P1-201ENST00000568105 661 ntBASIC22.24■■□□□ 1.15
DDX41Q9UJV9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
DDX41Q9UJV9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 KRT18P21-201ENST00000515767 1272 ntBASIC22.23■■□□□ 1.15
DDX41Q9UJV9 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
DDX41Q9UJV9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 PHGDH-210ENST00000641115 1638 ntBASIC22.22■■□□□ 1.15
DDX41Q9UJV9 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 UNC93B2-201ENST00000285383 730 ntBASIC22.22■■□□□ 1.15
DDX41Q9UJV9 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 YBX1P10-201ENST00000444752 975 ntBASIC22.22■■□□□ 1.15
DDX41Q9UJV9 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 AP000525.1-201ENST00000608286 694 ntBASIC22.22■■□□□ 1.15
DDX41Q9UJV9 TNXA-203ENST00000507684 2038 ntBASIC22.22■■□□□ 1.15
DDX41Q9UJV9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX41Q9UJV9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 KRT18P16-201ENST00000510337 1294 ntBASIC22.21■■□□□ 1.15
DDX41Q9UJV9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
DDX41Q9UJV9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.15
DDX41Q9UJV9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 AC004408.2-201ENST00000623613 2777 ntBASIC22.2■■□□□ 1.14
DDX41Q9UJV9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 KRT8P9-201ENST00000558927 1449 ntBASIC22.2■■□□□ 1.14
DDX41Q9UJV9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
DDX41Q9UJV9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms