Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 FITM1-202ENST00000559294 800 ntBASIC19.44■□□□□ 0.7
DKK3Q9UBP4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 AP000525.1-201ENST00000608286 694 ntBASIC19.44■□□□□ 0.7
DKK3Q9UBP4 AP000692.2-201ENST00000608391 879 ntBASIC19.44■□□□□ 0.7
DKK3Q9UBP4 AC011298.2-201ENST00000617989 482 ntBASIC19.44■□□□□ 0.7
DKK3Q9UBP4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DKK3Q9UBP4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 AC087499.1-201ENST00000418141 1075 ntBASIC19.43■□□□□ 0.7
DKK3Q9UBP4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.43■□□□□ 0.7
DKK3Q9UBP4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DKK3Q9UBP4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC008040.2-201ENST00000461049 708 ntBASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC091390.4-202ENST00000476426 537 ntBASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AP005242.2-201ENST00000580065 1175 ntBASIC19.42■□□□□ 0.7
DKK3Q9UBP4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC007952.6-201ENST00000573168 2673 ntBASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC003957.1-201ENST00000625108 2673 ntBASIC19.42■□□□□ 0.7
DKK3Q9UBP4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
DKK3Q9UBP4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.41■□□□□ 0.7
DKK3Q9UBP4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 ZNF815P-204ENST00000434898 1737 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 MIR1238-201ENST00000408483 83 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 AC211429.1-201ENST00000415277 523 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 FAM207BP-201ENST00000447172 505 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms