Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
KIAA1549Q9HCM3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 INGX-201ENST00000359239 846 ntBASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AC091390.4-202ENST00000476426 537 ntBASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 AC131212.4-201ENST00000623606 975 ntBASIC17.28■□□□□ 0.36
KIAA1549Q9HCM3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 KRT8P41-201ENST00000533985 1514 ntBASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.27■□□□□ 0.36
KIAA1549Q9HCM3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.27■□□□□ 0.35
KIAA1549Q9HCM3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
KIAA1549Q9HCM3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 TERF1P1-201ENST00000311003 1181 ntBASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AC004951.3-201ENST00000418645 1148 ntBASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AL160286.2-201ENST00000567150 934 ntBASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AC011298.2-201ENST00000617989 482 ntBASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 AC092865.7-201ENST00000641832 219 ntBASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.26■□□□□ 0.35
KIAA1549Q9HCM3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
KIAA1549Q9HCM3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms