Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 AC018553.1-201ENST00000616682 1458 ntBASIC17.23■□□□□ 0.35
USB1Q9BQ65 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 AC120498.9-201ENST00000339021 3867 ntBASIC17.22■□□□□ 0.35
USB1Q9BQ65 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.22■□□□□ 0.35
USB1Q9BQ65 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USB1Q9BQ65 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.22■□□□□ 0.35
USB1Q9BQ65 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 AP001271.2-201ENST00000624018 1556 ntBASIC17.21■□□□□ 0.35
USB1Q9BQ65 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 TUBB8P6-201ENST00000436895 1288 ntBASIC17.21■□□□□ 0.35
USB1Q9BQ65 AL355355.2-201ENST00000442321 338 ntBASIC17.21■□□□□ 0.35
USB1Q9BQ65 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 AC073912.3-201ENST00000624414 853 ntBASIC17.21■□□□□ 0.35
USB1Q9BQ65 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USB1Q9BQ65 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USB1Q9BQ65 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.21■□□□□ 0.35
USB1Q9BQ65 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.21■□□□□ 0.34
USB1Q9BQ65 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
USB1Q9BQ65 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.34
USB1Q9BQ65 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.21■□□□□ 0.34
USB1Q9BQ65 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
USB1Q9BQ65 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USB1Q9BQ65 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USB1Q9BQ65 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USB1Q9BQ65 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USB1Q9BQ65 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 NIFKP9-201ENST00000419265 221 ntBASIC17.2■□□□□ 0.34
USB1Q9BQ65 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USB1Q9BQ65 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.2■□□□□ 0.34
USB1Q9BQ65 KRT18P16-201ENST00000510337 1294 ntBASIC17.2■□□□□ 0.34
USB1Q9BQ65 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms