Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SHROOM3Q8TF72 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 RARRES2P10-201ENST00000564312 460 ntBASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.74■□□□□ 0.75
SHROOM3Q8TF72 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 SDHAP1-207ENST00000440850 2000 ntBASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.73■□□□□ 0.75
SHROOM3Q8TF72 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 RN7SL850P-201ENST00000579959 291 ntBASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 HLA-A-209ENST00000638375 975 ntBASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 RN7SL471P-201ENST00000580476 299 ntBASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.72■□□□□ 0.75
SHROOM3Q8TF72 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 RCN1P1-201ENST00000400413 996 ntBASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 AL355075.4-201ENST00000554988 638 ntBASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 Z99916.2-201ENST00000604037 246 ntBASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHROOM3Q8TF72 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms