Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SH3RF1Q7Z6J0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 PHGDH-210ENST00000641115 1638 ntBASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 AC004264.1-201ENST00000608354 794 ntBASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SH3RF1Q7Z6J0 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SH3RF1Q7Z6J0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SH3RF1Q7Z6J0 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 AL121906.2-201ENST00000621597 723 ntBASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SH3RF1Q7Z6J0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SH3RF1Q7Z6J0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SH3RF1Q7Z6J0 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.14■■□□□ 1.14
SH3RF1Q7Z6J0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms