Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 MTDHP1-201ENST00000605323 784 ntBASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 AC069544.1-201ENST00000609399 999 ntBASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ZNF549Q6P9A3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 LINC01465-201ENST00000408887 1940 ntBASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.19■□□□□ 0.66
ZNF549Q6P9A3 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ZNF549Q6P9A3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 TNXA-203ENST00000507684 2038 ntBASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 AC141586.3-201ENST00000562166 1838 ntBASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF549Q6P9A3 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 NBPF21P-201ENST00000425093 1451 ntBASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF549Q6P9A3 ESRRAP1-201ENST00000400596 1257 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms