Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
FOXA3P55318 NOC2LP1-202ENST00000452600 2235 ntBASIC14.51□□□□□ -0.09
FOXA3P55318 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA3P55318 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA3P55318 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.51□□□□□ -0.09
FOXA3P55318 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
FOXA3P55318 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 AL354751.1-201ENST00000412768 1863 ntBASIC14.51□□□□□ -0.09
FOXA3P55318 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.51□□□□□ -0.09
FOXA3P55318 AC097381.1-201ENST00000429019 1296 ntBASIC14.51□□□□□ -0.09
FOXA3P55318 AC105265.2-201ENST00000467189 838 ntBASIC14.51□□□□□ -0.09
FOXA3P55318 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.51□□□□□ -0.09
FOXA3P55318 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA3P55318 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
FOXA3P55318 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.51□□□□□ -0.09
FOXA3P55318 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.51□□□□□ -0.09
FOXA3P55318 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
FOXA3P55318 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 WIZP1-201ENST00000531444 2299 ntBASIC14.5□□□□□ -0.09
FOXA3P55318 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA3P55318 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 KRT18P20-201ENST00000548986 1279 ntBASIC14.5□□□□□ -0.09
FOXA3P55318 SLC7A5P2-201ENST00000553010 536 ntBASIC14.5□□□□□ -0.09
FOXA3P55318 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.5□□□□□ -0.09
FOXA3P55318 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 AL136162.1-201ENST00000607711 1078 ntBASIC14.5□□□□□ -0.09
FOXA3P55318 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
FOXA3P55318 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.5□□□□□ -0.09
FOXA3P55318 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
FOXA3P55318 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 RBM17P2-201ENST00000616397 1405 ntBASIC14.49□□□□□ -0.09
FOXA3P55318 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
FOXA3P55318 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
FOXA3P55318 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.49□□□□□ -0.09
FOXA3P55318 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
FOXA3P55318 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms