Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.13■□□□□ 0.81
PTPN9P43378 TEX21P-204ENST00000641479 1693 ntBASIC20.13■□□□□ 0.81
PTPN9P43378 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PTPN9P43378 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
PTPN9P43378 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.13■□□□□ 0.81
PTPN9P43378 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.13■□□□□ 0.81
PTPN9P43378 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.12■□□□□ 0.81
PTPN9P43378 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PTPN9P43378 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.12■□□□□ 0.81
PTPN9P43378 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.12■□□□□ 0.81
PTPN9P43378 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.12■□□□□ 0.81
PTPN9P43378 KSR1P1-201ENST00000446298 240 ntBASIC20.12■□□□□ 0.81
PTPN9P43378 UBE2SP1-201ENST00000450587 669 ntBASIC20.12■□□□□ 0.81
PTPN9P43378 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.12■□□□□ 0.81
PTPN9P43378 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.12■□□□□ 0.81
PTPN9P43378 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.12■□□□□ 0.81
PTPN9P43378 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.12■□□□□ 0.81
PTPN9P43378 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PTPN9P43378 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PTPN9P43378 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
PTPN9P43378 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 AL158047.1-201ENST00000445918 881 ntBASIC20.11■□□□□ 0.81
PTPN9P43378 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
PTPN9P43378 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.11■□□□□ 0.81
PTPN9P43378 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
PTPN9P43378 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 AF186192.3-201ENST00000583427 947 ntBASIC20.11■□□□□ 0.81
PTPN9P43378 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 TMEM191A-211ENST00000637163 1067 ntBASIC20.11■□□□□ 0.81
PTPN9P43378 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.11■□□□□ 0.81
PTPN9P43378 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PTPN9P43378 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
PTPN9P43378 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
PTPN9P43378 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN9P43378 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.1■□□□□ 0.81
PTPN9P43378 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PTPN9P43378 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.1■□□□□ 0.81
PTPN9P43378 RPS2P4-201ENST00000476944 856 ntBASIC20.1■□□□□ 0.81
PTPN9P43378 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.1■□□□□ 0.81
PTPN9P43378 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN9P43378 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN9P43378 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN9P43378 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN9P43378 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN9P43378 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PTPN9P43378 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN9P43378 AL135905.2-201ENST00000584934 1404 ntBASIC20.1■□□□□ 0.81
PTPN9P43378 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.1■□□□□ 0.81
PTPN9P43378 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.1■□□□□ 0.81
PTPN9P43378 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
PTPN9P43378 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PTPN9P43378 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
PTPN9P43378 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PTPN9P43378 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.09■□□□□ 0.81
PTPN9P43378 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN9P43378 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms