Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL3A1P02461 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC25.66■■□□□ 1.7
COL3A1P02461 ADM-207ENST00000530439 1839 ntTSL 2 BASIC25.66■■□□□ 1.7
COL3A1P02461 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL3A1P02461 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL3A1P02461 AC113347.1-201ENST00000413321 391 ntBASIC25.66■■□□□ 1.7
COL3A1P02461 PRSS44-201ENST00000515154 1146 ntBASIC25.66■■□□□ 1.7
COL3A1P02461 C2orf69P3-201ENST00000565542 1120 ntBASIC25.66■■□□□ 1.7
COL3A1P02461 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.66■■□□□ 1.7
COL3A1P02461 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.66■■□□□ 1.7
COL3A1P02461 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.66■■□□□ 1.7
COL3A1P02461 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC25.65■■□□□ 1.7
COL3A1P02461 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC25.65■■□□□ 1.7
COL3A1P02461 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
COL3A1P02461 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC25.65■■□□□ 1.7
COL3A1P02461 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC25.65■■□□□ 1.7
COL3A1P02461 TEX21P-204ENST00000641479 1693 ntBASIC25.65■■□□□ 1.7
COL3A1P02461 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC25.65■■□□□ 1.7
COL3A1P02461 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 SLC25A3P1-201ENST00000443844 931 ntBASIC25.65■■□□□ 1.7
COL3A1P02461 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC25.65■■□□□ 1.7
COL3A1P02461 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.65■■□□□ 1.7
COL3A1P02461 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC25.65■■□□□ 1.7
COL3A1P02461 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.65■■□□□ 1.7
COL3A1P02461 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL3A1P02461 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
COL3A1P02461 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL3A1P02461 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL3A1P02461 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.64■■□□□ 1.7
COL3A1P02461 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL3A1P02461 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL3A1P02461 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL3A1P02461 LINC01568-207ENST00000641790 1380 ntBASIC25.64■■□□□ 1.7
COL3A1P02461 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC25.64■■□□□ 1.7
COL3A1P02461 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
COL3A1P02461 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL3A1P02461 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC25.64■■□□□ 1.69
COL3A1P02461 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL3A1P02461 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
COL3A1P02461 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL3A1P02461 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.64■■□□□ 1.69
COL3A1P02461 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC25.64■■□□□ 1.69
COL3A1P02461 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.69
COL3A1P02461 GRAMD4P8-201ENST00000605465 1115 ntBASIC25.64■■□□□ 1.69
COL3A1P02461 AL023803.3-201ENST00000615559 522 ntBASIC25.64■■□□□ 1.69
COL3A1P02461 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC25.64■■□□□ 1.69
COL3A1P02461 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL3A1P02461 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL3A1P02461 GOLGA6L5P-202ENST00000515341 1828 ntBASIC25.64■■□□□ 1.69
COL3A1P02461 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC25.63■■□□□ 1.69
COL3A1P02461 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC25.63■■□□□ 1.69
COL3A1P02461 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 PCDHAC2-203ENST00000615316 3011 ntBASIC25.63■■□□□ 1.69
COL3A1P02461 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.63■■□□□ 1.69
COL3A1P02461 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
COL3A1P02461 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
COL3A1P02461 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC25.63■■□□□ 1.69
COL3A1P02461 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL3A1P02461 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 AC073508.3-201ENST00000619697 1419 ntBASIC25.62■■□□□ 1.69
COL3A1P02461 GAS2L1P1-201ENST00000420145 1480 ntBASIC25.62■■□□□ 1.69
COL3A1P02461 TERF1P1-201ENST00000311003 1181 ntBASIC25.62■■□□□ 1.69
COL3A1P02461 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 RN7SL850P-201ENST00000579959 291 ntBASIC25.62■■□□□ 1.69
COL3A1P02461 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC25.62■■□□□ 1.69
COL3A1P02461 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC25.62■■□□□ 1.69
COL3A1P02461 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC25.62■■□□□ 1.69
COL3A1P02461 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
COL3A1P02461 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL3A1P02461 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC25.61■■□□□ 1.69
COL3A1P02461 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
COL3A1P02461 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC25.61■■□□□ 1.69
COL3A1P02461 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC25.61■■□□□ 1.69
COL3A1P02461 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC25.61■■□□□ 1.69
COL3A1P02461 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC25.61■■□□□ 1.69
COL3A1P02461 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL3A1P02461 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL3A1P02461 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC25.6■■□□□ 1.69
COL3A1P02461 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL3A1P02461 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms