Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
AP3B1O00203 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
AP3B1O00203 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
AP3B1O00203 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
AP3B1O00203 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.54■□□□□ 0.72
AP3B1O00203 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
AP3B1O00203 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
AP3B1O00203 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
AP3B1O00203 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
AP3B1O00203 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.53■□□□□ 0.72
AP3B1O00203 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
AP3B1O00203 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.53■□□□□ 0.72
AP3B1O00203 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
AP3B1O00203 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
AP3B1O00203 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.53■□□□□ 0.72
AP3B1O00203 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.53■□□□□ 0.72
AP3B1O00203 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 AC087289.5-201ENST00000586076 3175 ntBASIC19.53■□□□□ 0.72
AP3B1O00203 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.53■□□□□ 0.72
AP3B1O00203 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.53■□□□□ 0.72
AP3B1O00203 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
AP3B1O00203 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.53■□□□□ 0.72
AP3B1O00203 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
AP3B1O00203 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.52■□□□□ 0.72
AP3B1O00203 TEX21P-204ENST00000641479 1693 ntBASIC19.52■□□□□ 0.72
AP3B1O00203 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
AP3B1O00203 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
AP3B1O00203 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 AL355802.2-201ENST00000402069 882 ntBASIC19.52■□□□□ 0.72
AP3B1O00203 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 KRT17P3-201ENST00000420566 1262 ntBASIC19.52■□□□□ 0.72
AP3B1O00203 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
AP3B1O00203 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 AC004264.1-201ENST00000608354 794 ntBASIC19.52■□□□□ 0.72
AP3B1O00203 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.52■□□□□ 0.72
AP3B1O00203 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
AP3B1O00203 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP3B1O00203 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.52■□□□□ 0.71
AP3B1O00203 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
AP3B1O00203 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.52■□□□□ 0.71
AP3B1O00203 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
AP3B1O00203 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.51■□□□□ 0.71
AP3B1O00203 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.51■□□□□ 0.71
AP3B1O00203 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.51■□□□□ 0.71
AP3B1O00203 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.51■□□□□ 0.71
AP3B1O00203 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.51■□□□□ 0.71
AP3B1O00203 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
AP3B1O00203 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
AP3B1O00203 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms