Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 SOX15-203ENST00000570788 1093 ntBASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TCRBV7S3A2A0A539 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 AL109923.1-201ENST00000618799 583 ntBASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TCRBV7S3A2A0A539 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 KRT18P16-201ENST00000510337 1294 ntBASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TCRBV7S3A2A0A539 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
TCRBV7S3A2A0A539 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TCRBV7S3A2A0A539 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TCRBV7S3A2A0A539 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.74
TCRBV7S3A2A0A539 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TCRBV7S3A2A0A539 AC104581.1-202ENST00000635932 2618 ntBASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 AC008687.6-201ENST00000596318 630 ntBASIC19.64■□□□□ 0.73
TCRBV7S3A2A0A539 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms