Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC108479.1-201ENST00000431142 427 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RPL36AP6-201ENST00000435770 321 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL031584.1-201ENST00000447169 754 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL138752.1-201ENST00000452964 351 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 SNORD5.1-201ENST00000458800 75 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC091982.1-202ENST00000473923 343 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RPL21P93-201ENST00000480465 489 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 SNORA25.11-201ENST00000515935 105 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC7.34□□□□□ -1.23
COL9A1P20849 OR4H6P-201ENST00000563771 921 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC130289.1-201ENST00000577321 73 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 AC008687.2-201ENST00000597865 520 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC245517.5-201ENST00000611529 162 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC118658.2-201ENST00000618697 459 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 PSG9-204ENST00000418820 1748 ntTSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 RBFOX1-203ENST00000355637 3321 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 AC104966.1-201ENST00000467010 1464 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AC127502.2-201ENST00000602663 2351 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 LINC01613-201ENST00000561476 2780 ntBASIC7.34□□□□□ -1.23
COL9A1P20849 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
COL9A1P20849 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL9A1P20849 CD86-204ENST00000469710 1604 ntTSL 2 BASIC7.34□□□□□ -1.24
COL9A1P20849 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL9A1P20849 AC145207.5-201ENST00000582866 2682 ntBASIC7.34□□□□□ -1.24
COL9A1P20849 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC7.33□□□□□ -1.24
COL9A1P20849 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 ZNF667-202ENST00000504904 4390 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 TRIM55-202ENST00000315962 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 DLD-204ENST00000437604 1859 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 RN7SKP130-201ENST00000364924 301 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 RNU6-1207P-201ENST00000384343 107 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 RNA5SP178-201ENST00000410380 128 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 RNU6-55P-201ENST00000411092 107 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC7.33□□□□□ -1.24
COL9A1P20849 AL139095.3-201ENST00000419672 1203 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC7.33□□□□□ -1.24
COL9A1P20849 ELOCP20-201ENST00000422460 345 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC7.33□□□□□ -1.24
COL9A1P20849 HIGD1AP11-201ENST00000438361 280 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 CBX1P2-201ENST00000453841 458 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AC011476.1-201ENST00000466725 307 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 RN7SL306P-201ENST00000492941 296 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 CEACAMP10-202ENST00000495431 496 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 RNU6-120P-201ENST00000516077 103 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 IGKV3D-31-201ENST00000519131 281 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 IL7-206ENST00000520269 456 ntTSL 3 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC040926.1-201ENST00000530195 238 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.33□□□□□ -1.24
COL9A1P20849 DUX4L52-201ENST00000549363 777 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AC012433.1-201ENST00000588916 398 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC020910.3-201ENST00000603701 874 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 AL031320.1-201ENST00000604177 357 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC010424.2-201ENST00000607594 443 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC7.33□□□□□ -1.24
COL9A1P20849 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
COL9A1P20849 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 DAZ2-206ENST00000382440 4119 ntAPPRIS P5 TSL 5 BASIC7.33□□□□□ -1.24
COL9A1P20849 AC092999.1-201ENST00000624004 1924 ntBASIC7.33□□□□□ -1.24
COL9A1P20849 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL9A1P20849 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 Z97832.2-201ENST00000605896 4261 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 AL136984.1-201ENST00000607611 1893 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 OFD1P17-201ENST00000437639 3018 ntBASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms