RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 PELP1Q8IZL8 1130 aaKnown RBP14.3□□□□□ -0.12
USF3-201ENST00000316407 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
USF3-201ENST00000316407 EHMT2Q96KQ7 1210 aa14.05□□□□□ -0.16
USF3-201ENST00000316407 SUPT5HO00267 1087 aaKnown RBP13.97□□□□□ -0.17
USF3-201ENST00000316407 ERICH6Q7L0X2 663 aa13.92□□□□□ -0.18
USF3-201ENST00000316407 MYT1Q01538 1121 aa13.83□□□□□ -0.2
USF3-201ENST00000316407 PCGF6Q9BYE7 350 aa13.71□□□□□ -0.22
USF3-201ENST00000316407 TTBK1Q5TCY1 1321 aaPredicted RBP13.67□□□□□ -0.22
USF3-201ENST00000316407 CENPBP07199 599 aaPredicted RBP13.65□□□□□ -0.22
USF3-201ENST00000316407 SHROOM4Q9ULL8 1493 aa13.64□□□□□ -0.23
USF3-201ENST00000316407 YTHDC1Q96MU7 727 aaKnown RBP13.6□□□□□ -0.23
USF3-201ENST00000316407 CCER1Q8TC90 406 aaPredicted RBP13.58□□□□□ -0.23
USF3-201ENST00000316407 APLP2Q06481 763 aa13.34□□□□□ -0.27
USF3-201ENST00000316407 NEFLP07196 543 aa13.33□□□□□ -0.28
USF3-201ENST00000316407 FAM9AQ8IZU1 332 aaPredicted RBP13.3□□□□□ -0.28
USF3-201ENST00000316407 ZEB1P37275 1124 aaPredicted RBP13.18□□□□□ -0.3
USF3-201ENST00000316407 RANGAP1P46060 587 aaPredicted RBP13.15□□□□□ -0.3
USF3-201ENST00000316407 DAXXQ9UER7 740 aaPredicted RBP13.11□□□□□ -0.31
USF3-201ENST00000316407 PPARGC1BQ86YN6 1023 aaKnown RBP13.02□□□□□ -0.33
USF3-201ENST00000316407 HRCP23327 699 aa12.93□□□□□ -0.34
USF3-201ENST00000316407 RTL5Q5HYW3 569 aaPredicted RBP12.92□□□□□ -0.34
USF3-201ENST00000316407 ATP1B4Q9UN42 357 aaPredicted RBP12.88□□□□□ -0.35
USF3-201ENST00000316407 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
USF3-201ENST00000316407 CNGB1Q14028 1251 aaPredicted RBP12.84□□□□□ -0.35
USF3-201ENST00000316407 POLR3GLQ9BT43 218 aa12.77□□□□□ -0.37
USF3-201ENST00000316407 BCANQ96GW7 911 aa12.76□□□□□ -0.37
USF3-201ENST00000316407 GTF3C3Q9Y5Q9 886 aa12.73□□□□□ -0.37
USF3-201ENST00000316407 TRIM41Q8WV44 630 aa12.72□□□□□ -0.37
USF3-201ENST00000316407 EIF5BO60841 1220 aaKnown RBP12.71□□□□□ -0.37
USF3-201ENST00000316407 NISCHQ9Y2I1 1504 aa12.7□□□□□ -0.38
USF3-201ENST00000316407 UBTFP17480 764 aaKnown RBP12.7□□□□□ -0.38
USF3-201ENST00000316407 TRIM26Q12899 539 aaPredicted RBP12.7□□□□□ -0.38
USF3-201ENST00000316407 CLSPNQ9HAW4 1339 aa12.67□□□□□ -0.38
USF3-201ENST00000316407 DIEXFQ68CQ4 756 aaKnown RBP12.66□□□□□ -0.38
USF3-201ENST00000316407 ITGAEP38570 1179 aa12.6□□□□□ -0.39
USF3-201ENST00000316407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.55□□□□□ -0.4
USF3-201ENST00000316407 HNRNPUL2Q1KMD3 747 aaKnown RBP12.5□□□□□ -0.41
USF3-201ENST00000316407 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
USF3-201ENST00000316407 LOC105371045A0A1W2PR82 267 aa12.44□□□□□ -0.42
USF3-201ENST00000316407 CDK11AQ9UQ88 783 aaPredicted RBP12.44□□□□□ -0.42
USF3-201ENST00000316407 GLIPR1L2Q4G1C9 344 aa12.41□□□□□ -0.42
USF3-201ENST00000316407 SLC4A1APQ9BWU0 796 aaKnown RBP12.4□□□□□ -0.42
USF3-201ENST00000316407 CHIC1Q5VXU3 224 aa12.39□□□□□ -0.43
USF3-201ENST00000316407 NPM2Q86SE8 214 aaKnown RBP12.38□□□□□ -0.43
USF3-201ENST00000316407 NBR1Q14596 966 aa12.37□□□□□ -0.43
USF3-201ENST00000316407 ARXQ96QS3 562 aa12.34□□□□□ -0.43
USF3-201ENST00000316407 ANP32AP39687 249 aaKnown RBP12.33□□□□□ -0.44
USF3-201ENST00000316407 ACIN1Q9UKV3 1341 aaKnown RBP12.32□□□□□ -0.44
USF3-201ENST00000316407 MYT1LQ9UL68 1186 aa12.21□□□□□ -0.45
USF3-201ENST00000316407 NEUROD1Q13562 356 aa12.21□□□□□ -0.46
USF3-201ENST00000316407 CANXP27824 592 aaKnown RBP12.17□□□□□ -0.46
USF3-201ENST00000316407 ANP32BQ92688 251 aaKnown RBP12.16□□□□□ -0.46
USF3-201ENST00000316407 SCAF1Q9H7N4 1312 aaKnown RBP12.16□□□□□ -0.46
USF3-201ENST00000316407 ANP32CO43423 234 aa12.15□□□□□ -0.46
USF3-201ENST00000316407 FKBP8Q14318 412 aa12.15□□□□□ -0.46
USF3-201ENST00000316407 ZBTB47Q9UFB7 747 aaPredicted RBP12.13□□□□□ -0.47
USF3-201ENST00000316407 ZNF326Q5BKZ1 582 aaKnown RBP12.12□□□□□ -0.47
USF3-201ENST00000316407 RTN4Q9NQC3 1192 aaKnown RBP12.11□□□□□ -0.47
USF3-201ENST00000316407 HSP90AA1P07900 732 aaKnown RBP12.09□□□□□ -0.47
USF3-201ENST00000316407 FAM50AQ14320 339 aaKnown RBP12.09□□□□□ -0.47
USF3-201ENST00000316407 SLC24A1O60721 1099 aa12.06□□□□□ -0.48
USF3-201ENST00000316407 AMER1Q5JTC6 1135 aaPredicted RBP12.03□□□□□ -0.48
USF3-201ENST00000316407 TRIM52Q96A61 297 aa11.99□□□□□ -0.49
USF3-201ENST00000316407 IRX6P78412 446 aaPredicted RBP11.97□□□□□ -0.49
USF3-201ENST00000316407 UPF2Q9HAU5 1272 aaKnown RBP11.91□□□□□ -0.5
USF3-201ENST00000316407 ANP32EQ9BTT0 268 aa11.9□□□□□ -0.5
USF3-201ENST00000316407 HNRNPUQ00839 825 aaKnown RBP eCLIP11.89□□□□□ -0.51
USF3-201ENST00000316407 NAP1L5Q96NT1 182 aaPredicted RBP11.88□□□□□ -0.51
USF3-201ENST00000316407 TNNT2P45379 298 aaPredicted RBP11.88□□□□□ -0.51
USF3-201ENST00000316407 SALL2Q9Y467 1007 aaPredicted RBP11.87□□□□□ -0.51
USF3-201ENST00000316407 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.86□□□□□ -0.51
USF3-201ENST00000316407 CCDC136Q96JN2 1154 aa11.86□□□□□ -0.51
USF3-201ENST00000316407 FAM9BQ8IZU0 186 aa11.85□□□□□ -0.51
USF3-201ENST00000316407 ARID4BQ4LE39 1312 aaPredicted RBP11.83□□□□□ -0.51
USF3-201ENST00000316407 TRIM44Q96DX7 344 aaPredicted RBP11.83□□□□□ -0.52
USF3-201ENST00000316407 NEFMP07197 916 aa11.81□□□□□ -0.52
USF3-201ENST00000316407 CDK11BP21127 795 aaKnown RBP11.8□□□□□ -0.52
USF3-201ENST00000316407 TPRNQ4KMQ1 711 aa11.8□□□□□ -0.52
USF3-201ENST00000316407 LAS1LQ9Y4W2 734 aaKnown RBP11.78□□□□□ -0.52
USF3-201ENST00000316407 ARID3AQ99856 593 aa11.76□□□□□ -0.53
USF3-201ENST00000316407 DNTTIP2Q5QJE6 756 aaKnown RBP11.76□□□□□ -0.53
USF3-201ENST00000316407 DDX10Q13206 875 aaKnown RBP11.76□□□□□ -0.53
USF3-201ENST00000316407 MIER1Q8N108 512 aa11.72□□□□□ -0.53
USF3-201ENST00000316407 PTMAP06454 111 aaKnown RBP11.71□□□□□ -0.53
USF3-201ENST00000316407 NCLP19338 710 aaKnown RBP11.71□□□□□ -0.54
USF3-201ENST00000316407 SENP3-EIF4A1A0A087X0R7 540 aa11.7□□□□□ -0.54
USF3-201ENST00000316407 ERICH6BQ5W0A0 696 aa11.69□□□□□ -0.54
USF3-201ENST00000316407 DEKP35659 375 aaKnown RBP11.67□□□□□ -0.54
USF3-201ENST00000316407 ZBTB7CA1YPR0 619 aa11.66□□□□□ -0.54
USF3-201ENST00000316407 ARID3CA6NKF2 412 aa11.64□□□□□ -0.55
USF3-201ENST00000316407 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.63□□□□□ -0.55
USF3-201ENST00000316407 HIRIP3Q9BW71 556 aaPredicted RBP11.63□□□□□ -0.55
USF3-201ENST00000316407 BECN1Q14457 450 aa11.63□□□□□ -0.55
USF3-201ENST00000316407 NOP58Q9Y2X3 529 aaKnown RBP11.62□□□□□ -0.55
USF3-201ENST00000316407 DDRGK1Q96HY6 314 aa11.62□□□□□ -0.55
USF3-201ENST00000316407 TONSLQ96HA7 1378 aa11.61□□□□□ -0.55
USF3-201ENST00000316407 TMC1Q8TDI8 760 aa11.59□□□□□ -0.55
USF3-201ENST00000316407 MRS2Q9HD23 443 aa11.58□□□□□ -0.56
USF3-201ENST00000316407 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
USF3-201ENST00000316407 GOLGA6L22H0YM25 854 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms