Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 RBM17P1-201ENST00000453646 1190 ntBASIC20.77■□□□□ 0.92
SIX4Q9UIU6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 AC130371.2-201ENST00000619443 611 ntBASIC20.77■□□□□ 0.92
SIX4Q9UIU6 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SIX4Q9UIU6 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SIX4Q9UIU6 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.77■□□□□ 0.91
SIX4Q9UIU6 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SIX4Q9UIU6 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 AC091390.4-202ENST00000476426 537 ntBASIC20.76■□□□□ 0.91
SIX4Q9UIU6 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.76■□□□□ 0.91
SIX4Q9UIU6 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 AC079598.2-202ENST00000546624 1451 ntBASIC20.75■□□□□ 0.91
SIX4Q9UIU6 FSCN1P1-201ENST00000568912 1481 ntBASIC20.75■□□□□ 0.91
SIX4Q9UIU6 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 AC004951.3-201ENST00000418645 1148 ntBASIC20.75■□□□□ 0.91
SIX4Q9UIU6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 SLC25A24-204ENST00000569674 2357 ntBASIC20.75■□□□□ 0.91
SIX4Q9UIU6 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.75■□□□□ 0.91
SIX4Q9UIU6 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 AC011298.2-201ENST00000617989 482 ntBASIC20.74■□□□□ 0.91
SIX4Q9UIU6 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.74■□□□□ 0.91
SIX4Q9UIU6 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 AP000525.1-201ENST00000608286 694 ntBASIC20.73■□□□□ 0.91
SIX4Q9UIU6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SIX4Q9UIU6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms