Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USB1Q9BQ65 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USB1Q9BQ65 SNORA78-201ENST00000459373 127 ntBASIC17.26■□□□□ 0.35
USB1Q9BQ65 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USB1Q9BQ65 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 AF186192.3-201ENST00000583427 947 ntBASIC17.26■□□□□ 0.35
USB1Q9BQ65 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USB1Q9BQ65 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USB1Q9BQ65 TFP1-202ENST00000475455 1573 ntBASIC17.26■□□□□ 0.35
USB1Q9BQ65 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.25■□□□□ 0.35
USB1Q9BQ65 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USB1Q9BQ65 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 LTB4R2-202ENST00000528054 3092 ntBASIC17.24■□□□□ 0.35
USB1Q9BQ65 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 KSR1P1-201ENST00000446298 240 ntBASIC17.24■□□□□ 0.35
USB1Q9BQ65 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
USB1Q9BQ65 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USB1Q9BQ65 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 AC113410.3-201ENST00000623366 203 ntBASIC17.23■□□□□ 0.35
USB1Q9BQ65 Z99916.3-201ENST00000623422 1080 ntBASIC17.23■□□□□ 0.35
USB1Q9BQ65 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.23■□□□□ 0.35
USB1Q9BQ65 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USB1Q9BQ65 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms