Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLIP4Q8N3C7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 AC005829.2-201ENST00000571422 1056 ntBASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CLIP4Q8N3C7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 SLC29A4P1-201ENST00000398760 971 ntBASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 AL390719.1-204ENST00000412397 1219 ntBASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 AC116351.2-201ENST00000606540 1585 ntBASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 Z82202.1-201ENST00000623446 1880 ntBASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLIP4Q8N3C7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 AC006557.6-201ENST00000623071 864 ntBASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CLIP4Q8N3C7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLIP4Q8N3C7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms