Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 AC124016.1-201ENST00000609552 612 ntBASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC65Q8IXS2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC65Q8IXS2 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 AC133681.1-201ENST00000465482 601 ntBASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 AC104417.2-201ENST00000562989 1793 ntBASIC21.51■■□□□ 1.03
CCDC65Q8IXS2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 KRT16P5-201ENST00000455284 522 ntBASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 C1QL1P1-201ENST00000568105 661 ntBASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC65Q8IXS2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 TSPY20P-201ENST00000450910 630 ntBASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 AC110285.5-201ENST00000611501 352 ntBASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC65Q8IXS2 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC65Q8IXS2 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC65Q8IXS2 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms