Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC50Q8IVM0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC50Q8IVM0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC50Q8IVM0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC50Q8IVM0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CCDC50Q8IVM0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 DUSP5P2-201ENST00000426873 1033 ntBASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 AC083906.2-201ENST00000511578 360 ntBASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 AL121832.2-201ENST00000610979 668 ntBASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CCDC50Q8IVM0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC50Q8IVM0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC50Q8IVM0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 SLC29A4P1-201ENST00000398760 971 ntBASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 AC005829.2-201ENST00000571422 1056 ntBASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC50Q8IVM0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
CCDC50Q8IVM0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC50Q8IVM0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC50Q8IVM0 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC50Q8IVM0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.39■□□□□ 0.86
CCDC50Q8IVM0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms