Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 AC133681.1-201ENST00000465482 601 ntBASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTCHD3Q3KNS1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 SNORA78-201ENST00000459373 127 ntBASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 PRKY-204ENST00000533551 1019 ntBASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 AC110285.5-201ENST00000611501 352 ntBASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTCHD3Q3KNS1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PTCHD3Q3KNS1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PTCHD3Q3KNS1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 KRT18P16-201ENST00000510337 1294 ntBASIC18.91■□□□□ 0.62
PTCHD3Q3KNS1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms