Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA3P55318 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
FOXA3P55318 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC14.54□□□□□ -0.08
FOXA3P55318 GRAMD4P2-201ENST00000423297 1097 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA3P55318 AC024257.2-201ENST00000549699 147 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA3P55318 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
FOXA3P55318 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA3P55318 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.54□□□□□ -0.08
FOXA3P55318 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 AC093525.10-201ENST00000625130 1569 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 PTBP1P-201ENST00000554374 1601 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 AL031598.1-201ENST00000561511 1773 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 NOC2LP2-201ENST00000407594 1944 ntBASIC14.54□□□□□ -0.08
FOXA3P55318 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
FOXA3P55318 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
FOXA3P55318 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
FOXA3P55318 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA3P55318 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 Z98044.1-201ENST00000632503 1764 ntBASIC14.53□□□□□ -0.08
FOXA3P55318 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
FOXA3P55318 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA3P55318 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
FOXA3P55318 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.53□□□□□ -0.08
FOXA3P55318 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 AC099791.1-201ENST00000416440 715 ntBASIC14.53□□□□□ -0.08
FOXA3P55318 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA3P55318 AL356441.2-201ENST00000443009 864 ntBASIC14.53□□□□□ -0.08
FOXA3P55318 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA3P55318 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA3P55318 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
FOXA3P55318 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA3P55318 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
FOXA3P55318 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA3P55318 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA3P55318 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 AC079140.4-201ENST00000507448 529 ntBASIC14.52□□□□□ -0.09
FOXA3P55318 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 CD44-222ENST00000526025 1052 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA3P55318 AL356652.1-201ENST00000615962 565 ntBASIC14.52□□□□□ -0.09
FOXA3P55318 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA3P55318 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA3P55318 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA3P55318 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA3P55318 AC141586.3-201ENST00000562166 1838 ntBASIC14.52□□□□□ -0.09
FOXA3P55318 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms