Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BRCC3P46736 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
BRCC3P46736 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.65■□□□□ 0.9
BRCC3P46736 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
BRCC3P46736 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 PCDHAC2-203ENST00000615316 3011 ntBASIC20.65■□□□□ 0.9
BRCC3P46736 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRCC3P46736 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.65■□□□□ 0.9
BRCC3P46736 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
BRCC3P46736 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRCC3P46736 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
BRCC3P46736 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.64■□□□□ 0.89
BRCC3P46736 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.64■□□□□ 0.89
BRCC3P46736 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.64■□□□□ 0.89
BRCC3P46736 FAM87A-204ENST00000613235 858 ntBASIC20.64■□□□□ 0.89
BRCC3P46736 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
BRCC3P46736 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
BRCC3P46736 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRCC3P46736 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
BRCC3P46736 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCC3P46736 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCC3P46736 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCC3P46736 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
BRCC3P46736 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.63■□□□□ 0.89
BRCC3P46736 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.63■□□□□ 0.89
BRCC3P46736 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.63■□□□□ 0.89
BRCC3P46736 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
BRCC3P46736 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.63■□□□□ 0.89
BRCC3P46736 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRCC3P46736 LINC01521-201ENST00000504184 1943 ntBASIC20.63■□□□□ 0.89
BRCC3P46736 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.62■□□□□ 0.89
BRCC3P46736 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
BRCC3P46736 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 AC128688.1-201ENST00000487626 519 ntBASIC20.62■□□□□ 0.89
BRCC3P46736 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.62■□□□□ 0.89
BRCC3P46736 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.62■□□□□ 0.89
BRCC3P46736 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.62■□□□□ 0.89
BRCC3P46736 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
BRCC3P46736 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.62■□□□□ 0.89
BRCC3P46736 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
BRCC3P46736 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
BRCC3P46736 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCC3P46736 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
BRCC3P46736 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.61■□□□□ 0.89
BRCC3P46736 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
BRCC3P46736 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.61■□□□□ 0.89
BRCC3P46736 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
BRCC3P46736 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.61■□□□□ 0.89
BRCC3P46736 AC104076.2-201ENST00000448912 469 ntBASIC20.61■□□□□ 0.89
BRCC3P46736 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.61■□□□□ 0.89
BRCC3P46736 AL049597.2-201ENST00000565575 961 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms